Identified secondary metabolite clusters

Cluster Type From To Size (kb) Core domains Product/substrate predicted by subgroup Most similar known cluster MIBiG BGC-ID
The following clusters are from record NC_030381.2:
Cluster 1Cyclopeptide27954253162219366.79BURP---
Cluster 2Alkaloid57620375901501139.46BBE, Epimerase, FAD_binding_4, Methyltransf_11, adh_short, p450-alpha-chaconine/alpha-solanine (9% of genes show similarity)BGC0002722.2_c1
Cluster 3Fatty_acid-Alkaloid5926147602240996.26Cu_amine_oxid, Epimerase, FA_hydroxylase, p450---
Cluster 4Saccharide208020642085027948.22Cellulose_synt, Lipoxygenase, p450---
Cluster 5Terpene3402010334126495106.392OG-FeII_Oxy, DIOX_N, Terpene_synth, Terpene_synth_C, p450---
Cluster 6Polyketide-Alkaloid4346833443576540108.21BBE, Chal_sti_synt_C, FAD_binding_4, FAE1_CUT1_RppA, p450---
Cluster 7Terpene458357674590886273.09Abhydrolase_3, PRISE, Peptidase_S10---
Cluster 8Fatty_acid-Alkaloid474604024750417943.78BBE, FAD_binding_4, FA_hydroxylase---
Cluster 9Terpene4819839048308307109.92SQHop_cyclase_C, SQHop_cyclase_N, p450dammarenyl-4--
Cluster 10Terpene497139094977226658.36Terpene_synth, Terpene_synth_C, Transferase, p450---
Cluster 11Cyclopeptide5093301151212238279.23BURP---
Cluster 12Cyclopeptide5348686153833638346.78BURP---
The following clusters are from record NC_030382.2:
Cluster 13Saccharide2498638725241575255.192OG-FeII_Oxy, AMP-binding, Cellulose_synt, DIOX_N---
Cluster 14Putative3311189133216187104.302OG-FeII_Oxy, ADH_N, ADH_zinc_N, DIOX_N---
Cluster 15Transporter_associated-Saccharide3327692933418740141.81ABC_tran, BBE, FAD_binding_4, Transferase, UDPGT_2, adh_short*saccharide, cytokinin--
Cluster 16Fatty_acid-Terpene3509610435212711116.612OG-FeII_Oxy, Abhydrolase_3, DIOX_N, FA_desaturase, PRISE---
Cluster 17Fatty_acid3761987437737717117.84AMP-binding, Peptidase_S10, Transferase---
Cluster 18Fatty_acid-Saccharide3912280239241777118.972OG-FeII_Oxy, Cellulose_synt, DIOX_N, FA_desaturase, UDPGT_2alkaloid, cytokinin--
Cluster 19Saccharide454247334550057675.84Epimerase, Glycos_transf_1, Methyltransf_11---
Cluster 20Fatty_acid-Terpene492270284929274365.722OG-FeII_Oxy, DIOX_N, FA_desaturase, PRISE---
Cluster 21Fatty_acid-Alkaloid5272366452845010121.35BBE, FAD_binding_4, FA_hydroxylase---
The following clusters are from record NC_030383.2:
Cluster 22Cyclopeptide17466322095595348.96BURP---
Cluster 23Alkaloid-Saccharide-Lignan3462737354265979.92Bet_v_1, Dirigent, LTP_2, UDPGT_2flavonoid, oleananes--
Cluster 24Transporter_associated68390376950155111.122OG-FeII_Oxy, ADH_N, ADH_zinc_N, AMP-binding, DIOX_N, MatE, p450---
Cluster 25Fatty_acid-Saccharide6999125706193662.81FA_hydroxylase, NAD_binding_1, UDPGT_2---
Cluster 26Polyketide7263715735201188.302OG-FeII_Oxy, Chal_sti_synt_C, DIOX_N, Dimerisation, FAE1_CUT1_RppA, Methyltransf_2---
Cluster 27Saccharide1116539411280015114.62Amino_oxidase, Epimerase, UDPGT_2flavonoidalpha-chaconine/alpha-solanine (9% of genes show similarity)BGC0002722.2_c1
Cluster 28Alkaloid130010561308764986.59Amino_oxidase, Bet_v_1, Methyltransf_11---
Cluster 29Transporter_associated-Saccharide5310902453357778248.752OG-FeII_Oxy, ADH_N, ADH_zinc_N, Aminotran_1_2, DAHP_synth_2, DIOX_N, MatE, UDPGT_2, adh_short_C2cyanogenic glucoside, monoterpenoidlinamarin/lotaustralin (25% of genes show similarity)BGC0001318.4_c1
Cluster 30Putative592954355939367798.24Dimerisation, Epimerase, Methyltransf_2, Transferase, p450---
Cluster 31Saccharide623934866249151198.032OG-FeII_Oxy, Cellulose_synt, DIOX_N, p450oleananes--
The following clusters are from record NC_030384.2:
Cluster 32Alkaloid-Terpene311642323122535261.12AMP-binding, Abhydrolase_3, Str_synth, Terpene_synth, Terpene_synth_C---
Cluster 33Polyketide-Alkaloid3831115138506207195.06ABC2_membrane, ABC_tran, AMP-binding, Chal_sti_synt_C, FAE1_CUT1_RppA, Methyltransf_11, Str_synth, adh_short---
Cluster 34Saccharide406304464067964349.202OG-FeII_Oxy, DIOX_N, Glycos_transf_1, Transferase---
Cluster 35Polyketide424668604253052563.66AMP-binding, Chal_sti_synt_C, Epimerase, FAE1_CUT1_RppA---
Cluster 36Alkaloid440452344413325888.02BBE, FAD_binding_4, Str_synth---
The following clusters are from record NC_030385.2:
Cluster 37Transporter_associated1484142155789873.762OG-FeII_Oxy, ABC2_membrane, ABC_tran, Aminotran_1_2, DIOX_N---
Cluster 38Cyclopeptide37486144082049333.44BURP---
Cluster 39Terpene8166456823125564.80DAHP_synth_1, Terpene_synth, Terpene_synth_C, p450---
Cluster 40Terpene2564161725760776119.16Epimerase, Terpene_synth, Terpene_synth_C, p450---
Cluster 41Putative2617544526295711120.27Chalcone, Epimerase, p450, polyprenyl_synt---
Cluster 42Saccharide270696202712917959.562OG-FeII_Oxy, DIOX_N, UDPGT_2, p450flavonoid, oleananes--
Cluster 43Fatty_acid3019184130353602161.76Epimerase, FA_desaturase, NAD_binding_4, Peptidase_S10, Transferase---
Cluster 44Terpene3484430434950293105.99Epimerase, Terpene_synth, Terpene_synth_C, p450---
Cluster 45Fatty_acid376184863768641967.932OG-FeII_Oxy, DIOX_N, FA_desaturase, p450---
Cluster 46Saccharide383995693846413964.57AMP-binding, Peptidase_S10, UDPGT_2---
Cluster 47Polyketide-Saccharide-Transporter_associated4052994040989708459.77ABC2_membrane, ABC_tran, Cellulose_synt, Chal_sti_synt_C, Chal_sti_synt_N, Dimerisation, Methyltransf_2, UDPGT_2, p450alkaloid-2, cytokinin-2--
Cluster 48Saccharide446707004469854927.852OG-FeII_Oxy, DIOX_N, Epimerase, UDPGT_2cyanogenic glucoside, monoterpenoid--
The following clusters are from record NC_030386.2:
Cluster 49Polyketide68513577068693217.34Acetyltransf_1, Chal_sti_synt_C, FAE1_CUT1_RppA, Lycopene_cycl, p450---
Cluster 50Polyketide201383822022432185.94AMP-binding, Chal_sti_synt_C, FAE1_CUT1_RppA, Lipoxygenase, p450---
Cluster 51Cyclopeptide2051702220861119344.10BURP---
Cluster 52Saccharide2887583928997360121.52Transferase, UDPGT_2---
Cluster 53Putative3422347534336083112.61Aminotran_1_2, Lycopene_cycl, Methyltransf_11---
Cluster 54Putative3481437434926982112.61Aminotran_1_2, Lycopene_cycl, Methyltransf_11---
Cluster 55Saccharide3541481335520694105.88Glycos_transf_1, Methyltransf_11, p450---
Cluster 56Alkaloid358003513582745527.10Acetyltransf_1, Bet_v_1---
The following clusters are from record NC_030387.2:
Cluster 57Fatty_acid-Saccharide5142379523711094.73ADH_N_2, ADH_zinc_N, FA_desaturase, UDPGT_2carboxyl-2--
Cluster 58Alkaloid6373675646125187.582OG-FeII_Oxy, BBE, DIOX_N, FAD_binding_4, adh_short---
Cluster 59Putative82488028380827132.033Beta_HSD, Methyltransf_11, adh_short---
Cluster 60Alkaloid-Saccharide132504221330453754.12Bet_v_1, Epimerase, UDPGT_2---
Cluster 61Saccharide136709221373623065.312OG-FeII_Oxy, Cellulose_synt, DIOX_N---
Cluster 62Putative323691463242237953.232OG-FeII_Oxy, DIOX_N, Prenyltransf, adh_short_C2, p450---
Cluster 63Cyclopeptide3882010639116981296.88BURP---
The following clusters are from record NC_030388.2:
Cluster 64Fatty_acid-Saccharide1236066812464054103.39AMP-binding, Transferase, UDPGT_2cyanogenic glucoside, monoterpenoid--
Cluster 65Sesterterpene160393721610887769.50Terpene_synth, Terpene_synth_C, polyprenyl_synt---
Cluster 66Saccharide1724389517455581211.69UDPGT_2, p450*saccharide, cyanogenic glucoside-9, monoterpenoid-9--
Cluster 67Terpene-Saccharide1999178420236214244.432OG-FeII_Oxy, DIOX_N, SQHop_cyclase_C, SQHop_cyclase_N, UDPGT_2, UbiA, p450Cycloartenol, alkaloid, cytokinin--
Cluster 68Fatty_acid227468592279129844.44ADH_N, ADH_zinc_N, FA_desaturase, p450-falcarindiol (50% of genes show similarity)BGC0002404.2_c1
Cluster 69Polyketide261739442625247078.53COesterase, Chal_sti_synt_C, Epimerase, FAE1_CUT1_RppA---
Cluster 70Terpene-Saccharide285591412863407374.932OG-FeII_Oxy, DIOX_N, Glyco_hydro_1, Terpene_synth, Terpene_synth_C---
Cluster 71Terpene292957662936806672.30Peptidase_S10, Prenyltrans, SE---
Cluster 72Putative295137162960586392.15Aldo_ket_red, p450---
Cluster 73Alkaloid296394742972061381.14MatE, Pyridoxal_deC, adh_short_C2---
Cluster 74Saccharide3131235631424724112.37AMP-binding, Epimerase, UDPGT_2*saccharide--
Cluster 75Cyclopeptide3220863232462362253.73BURP---
The following clusters are from record NC_030389.2:
Cluster 76Cyclopeptide723709949355225.65BURP---
Cluster 77Fatty_acid88262408950828124.59CER1-like_C, FA_hydroxylase, Methyltransf_7, NAD_binding_1---
Cluster 78Alkaloid-Terpene90075099375585368.08AMP-binding, Bet_v_1, ECH_2, Methyltransf_7, Terpene_synth, Terpene_synth_C, p450---
Cluster 79Saccharide1021103410320213109.18UDPGT_2, UbiA, adh_short---
Cluster 80Alkaloid298741442995253278.39BBE, FAD_binding_4, adh_short, p450---
Cluster 81Fatty_acid-Alkaloid3002514830142766117.62BBE, FAD_binding_4, FA_desaturase_2, Transferase---
Cluster 82Cyclopeptide4470408145058453354.37BURP---

NC_030381 - Cluster 1 - Cyclopeptide

Gene cluster description

Download cluster GenBank file
NC_030381 - Gene Cluster 1. Type = cyclopeptide. Location: 2795425 - 3162219 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Repeatfinder output

Similar gene clusters

NC_030381 - Cluster 2 - Alkaloid

Gene cluster description

Download cluster GenBank file
NC_030381 - Gene Cluster 2. Type = alkaloid. Location: 5762037 - 5901501 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

Similar known gene clusters

NC_030381 - Cluster 3 - Fatty_acid-alkaloid

Gene cluster description

Download cluster GenBank file
NC_030381 - Gene Cluster 3. Type = fatty_acid-alkaloid. Location: 5926147 - 6022409 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030381 - Cluster 4 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030381 - Gene Cluster 4. Type = saccharide. Location: 20802064 - 20850279 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030381 - Cluster 5 - Terpene

Gene cluster description

Download cluster GenBank file
NC_030381 - Gene Cluster 5. Type = terpene. Location: 34020103 - 34126495 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030381 - Cluster 6 - Polyketide-alkaloid

Gene cluster description

Download cluster GenBank file
NC_030381 - Gene Cluster 6. Type = polyketide-alkaloid. Location: 43468334 - 43576540 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030381 - Cluster 7 - Terpene

Gene cluster description

Download cluster GenBank file
NC_030381 - Gene Cluster 7. Type = terpene. Location: 45835767 - 45908862 nt. Click on genes for more information.
Show pHMM detection rules used
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030381 - Cluster 8 - Fatty_acid-alkaloid

Gene cluster description

Download cluster GenBank file
NC_030381 - Gene Cluster 8. Type = fatty_acid-alkaloid. Location: 47460402 - 47504179 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030381 - Cluster 9 - Terpene

Gene cluster description

Download cluster GenBank file
NC_030381 - Gene Cluster 9. Type = terpene. Location: 48198390 - 48308307 nt. Click on genes for more information.
Show pHMM detection rules used
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030381 - Cluster 10 - Terpene

Gene cluster description

Download cluster GenBank file
NC_030381 - Gene Cluster 10. Type = terpene. Location: 49713909 - 49772266 nt. Click on genes for more information.
Show pHMM detection rules used
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030381 - Cluster 11 - Cyclopeptide

Gene cluster description

Download cluster GenBank file
NC_030381 - Gene Cluster 11. Type = cyclopeptide. Location: 50933011 - 51212238 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Repeatfinder output

Similar gene clusters

NC_030381 - Cluster 12 - Cyclopeptide

Gene cluster description

Download cluster GenBank file
NC_030381 - Gene Cluster 12. Type = cyclopeptide. Location: 53486861 - 53833638 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Repeatfinder output

Similar gene clusters

NC_030382 - Cluster 13 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030382 - Gene Cluster 13. Type = saccharide. Location: 24986387 - 25241575 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030382 - Cluster 14 - Putative

Gene cluster description

Download cluster GenBank file
NC_030382 - Gene Cluster 14. Type = putative. Location: 33111891 - 33216187 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030382 - Cluster 15 - Transporter_associated-saccharide

Gene cluster description

Download cluster GenBank file
NC_030382 - Gene Cluster 15. Type = transporter_associated-saccharide. Location: 33276929 - 33418740 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))
plants/transporter_associated: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[MatE/LTP_2/ABC2_membrane/ABC_tran]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030382 - Cluster 16 - Fatty_acid-terpene

Gene cluster description

Download cluster GenBank file
NC_030382 - Gene Cluster 16. Type = fatty_acid-terpene. Location: 35096104 - 35212711 nt. Click on genes for more information.
Show pHMM detection rules used
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030382 - Cluster 17 - Fatty_acid

Gene cluster description

Download cluster GenBank file
NC_030382 - Gene Cluster 17. Type = fatty_acid. Location: 37619874 - 37737717 nt. Click on genes for more information.
Show pHMM detection rules used
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030382 - Cluster 18 - Fatty_acid-saccharide

Gene cluster description

Download cluster GenBank file
NC_030382 - Gene Cluster 18. Type = fatty_acid-saccharide. Location: 39122802 - 39241777 nt. Click on genes for more information.
Show pHMM detection rules used
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030382 - Cluster 19 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030382 - Gene Cluster 19. Type = saccharide. Location: 45424733 - 45500576 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030382 - Cluster 20 - Fatty_acid-terpene

Gene cluster description

Download cluster GenBank file
NC_030382 - Gene Cluster 20. Type = fatty_acid-terpene. Location: 49227028 - 49292743 nt. Click on genes for more information.
Show pHMM detection rules used
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030382 - Cluster 21 - Fatty_acid-alkaloid

Gene cluster description

Download cluster GenBank file
NC_030382 - Gene Cluster 21. Type = fatty_acid-alkaloid. Location: 52723664 - 52845010 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030383 - Cluster 22 - Cyclopeptide

Gene cluster description

Download cluster GenBank file
NC_030383 - Gene Cluster 22. Type = cyclopeptide. Location: 1746632 - 2095595 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Repeatfinder output

The following known motifs were found in CDS LOC108212020
Location between 1779711 and 1789296
.L.Y..Y was found 2 times in this sequence
Sequence:
MGMGGQGKTTLARMVYNRDVVTDMFKKRMWVTVSDDFDFMKILNQMVASLTSTASVLENTEGL
IKKLQSFLRDVKFLLVLDDVWNERTEKWNKLRDSLLGVGGASGSMILVTTRKQKVVDVMRCFIT
HRVEKLSEEDSWELFKRRAFSRGGVIETARFAAMGREMVERCGGLPLAINALGGLLHSKKSEQE
WLRIQDSATWDSNDDVLPSLRLSYDNLPHSSLKKCFAYCSILPKDSRISKDEMVRIWMALGFLL
PPKGSNKLMEDIGREYFNILLWNCLLQNGDIRDYKMHDLVHDLALDLSRNHSATVKADGHELND
ISKAIYVKVDKGITNIKPPLLKRNFEKVQVLYADAPIVKDLVPYPSHLIGLVLEGTFEDDPLPS
SLSTLKYLKYLDISRCYMTKNKLPDYITRLYNLQTLSVRSVTQLPRNICNLINLRHILVDAPYY
DFENSDIITVFSRIERLTCLQTLPFFIVSRDHQCVIGQLGSLRNLQGTLTLYGLSDVENMEEAR
KASLLTKSNIERLQLDWRKNKDVMEEKENNHEDVMEGLEPHANLRELIVENFMGKKFAAWITIM
TNLEVITFINCNRCEEFPQLGHLPKLRMIDIEGMDNVKVISSHLCGGRQGSISGELNDDGAEET
VLTMYPSLKNLSLNNMPKLEEWLDPATDTSDEDRNNVLAFSELVELIIWGCPKLTRIPGSCYPL
MKTLKIKDLDNSKLLESMSEKACGLTGVYLDNISGRVGCSSSSSCSSSSMNCIIGKLLKNNSVS
LETLRVIKLQGLTHLTLGAGLKSLCVSDLPDLNTINIVKGSDALKYLSISKCLNYEVFAQSVSC
TIERLELGPFSEDLDEFPWPLSFSFPNVIKLTVSGWEKLKWIVDEGQPDDYLSSIFPALRQLWI
DSFKGVKSLPISLAKLPFLESLYIWNCGNLESLPKFHHNFQYLDIIGCPIIKERYRRGSGPEWS
KIQHIKQIVGLVDLASGLVFRLVSLAAEELIQAWNLQEDLVTLQERLEEINALLSDADSKRLKL
SAVQSWFSKLEAVARVADAFMDQLAYEITRRKVENRSTLRDLFSTKNSILYRFKVAQKIKSINS
SFDKIFEWAGKLGLQPVAQLTSTVQPREIRNTPPCEDESQIVGREDDISFLVETVCTNHAEDLP
VIAVMGMGGQGKTTLARMVYNRDVVTDMFTERIWVSVSDDFDFMKILNQMVASLTSTASSIENP
EGVIKKLQNSLSGVKFLLVLDDVWNERPEEWDNLRNSLLGVRGASGSKILVTTRKQEVVNAMRS
LGIVQAKSIFTRRSFRNAKIYGHGKKNGGKVWWPAFGNKDTRGIQNNPRWNSDGVLSSLRLSYD
NLPYSSLKKCFTYCSILPKDSTVWKNEMIRIWMALGFLLPPKGSNILMEDVGSEYFNILVWNCL
LQDVRRNKYGTSCKMHDLVHDLALDLSKNHSVTVEADHELNHISNAIYVRVDEGISNIKPPILK
RKFEKVQVLYAEAYIVNDLVPYPSHLIGLVLKHSLRGELPNSLSNLKYLKYLDISNFGIIYKLP
DYFTRLYNLQTLSVWITTQLPRKICNLINLRHILVVHDVELGSSDMFSKIERLTCLQTLPQYVV
SRDHQCLIGQLGSLKNLQGTLKIYGLNDVENMEEARKASLHTKSNIEHLKLVWSWNIDVMEEKE
NNHEDVMEGLQPHTNLKELAVEIFWGKKFATWIIMMINLEVITFDNCKRCEEFPQLGHLPKLRK
IWIEGMDNVKVIRSHLCGSQSSISGENGEEETVATMYPSLKNLHLRILPNLEEWQDPAMDNVLV
FPKLEELRILECPKLTRIPGSCYPLMKTLHITDLDSSKLLESMSEKACGLKDLQLQNISGGVGC
SSSSSMNFIMGELLKNNSVSLETLCVGKLQGLTYLTLGAGLKSLRLTNLLELNTINVVKGSDAL
KDLSISRCPNYEVFASSVSSTIEILELGRSSEDLDKFPWPLSFSFPNVIKLTLWGWEKLEWIVD
EGQPDDYLTSIFPALRDLSIRRFEGVKTLPISLEKLPFLERLYIESCGNLESLPKFHHNFQFLN
IFNCPIIKERYRKGSGPEWSKIQHIKQIDGLD

Similar gene clusters

NC_030383 - Cluster 23 - Alkaloid-saccharide-lignan

Gene cluster description

Download cluster GenBank file
NC_030383 - Gene Cluster 23. Type = alkaloid-saccharide-lignan. Location: 3462737 - 3542659 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))
plants/lignan: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Dirigent]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030383 - Cluster 24 - Transporter_associated

Gene cluster description

Download cluster GenBank file
NC_030383 - Gene Cluster 24. Type = transporter_associated. Location: 6839037 - 6950155 nt. Click on genes for more information.
Show pHMM detection rules used
plants/transporter_associated: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[MatE/LTP_2/ABC2_membrane/ABC_tran]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030383 - Cluster 25 - Fatty_acid-saccharide

Gene cluster description

Download cluster GenBank file
NC_030383 - Gene Cluster 25. Type = fatty_acid-saccharide. Location: 6999125 - 7061936 nt. Click on genes for more information.
Show pHMM detection rules used
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030383 - Cluster 26 - Polyketide

Gene cluster description

Download cluster GenBank file
NC_030383 - Gene Cluster 26. Type = polyketide. Location: 7263715 - 7352011 nt. Click on genes for more information.
Show pHMM detection rules used
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030383 - Cluster 27 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030383 - Gene Cluster 27. Type = saccharide. Location: 11165394 - 11280015 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

Similar known gene clusters

NC_030383 - Cluster 28 - Alkaloid

Gene cluster description

Download cluster GenBank file
NC_030383 - Gene Cluster 28. Type = alkaloid. Location: 13001056 - 13087649 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030383 - Cluster 29 - Transporter_associated-saccharide

Gene cluster description

Download cluster GenBank file
NC_030383 - Gene Cluster 29. Type = transporter_associated-saccharide. Location: 53109024 - 53357778 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))
plants/transporter_associated: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[MatE/LTP_2/ABC2_membrane/ABC_tran]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

Similar known gene clusters

NC_030383 - Cluster 30 - Putative

Gene cluster description

Download cluster GenBank file
NC_030383 - Gene Cluster 30. Type = putative. Location: 59295435 - 59393677 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030383 - Cluster 31 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030383 - Gene Cluster 31. Type = saccharide. Location: 62393486 - 62491511 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030384 - Cluster 32 - Alkaloid-terpene

Gene cluster description

Download cluster GenBank file
NC_030384 - Gene Cluster 32. Type = alkaloid-terpene. Location: 31164232 - 31225352 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030384 - Cluster 33 - Polyketide-alkaloid

Gene cluster description

Download cluster GenBank file
NC_030384 - Gene Cluster 33. Type = polyketide-alkaloid. Location: 38311151 - 38506207 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030384 - Cluster 34 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030384 - Gene Cluster 34. Type = saccharide. Location: 40630446 - 40679643 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030384 - Cluster 35 - Polyketide

Gene cluster description

Download cluster GenBank file
NC_030384 - Gene Cluster 35. Type = polyketide. Location: 42466860 - 42530525 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030384 - Cluster 36 - Alkaloid

Gene cluster description

Download cluster GenBank file
NC_030384 - Gene Cluster 36. Type = alkaloid. Location: 44045234 - 44133258 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030385 - Cluster 37 - Transporter_associated

Gene cluster description

Download cluster GenBank file
NC_030385 - Gene Cluster 37. Type = transporter_associated. Location: 1484142 - 1557898 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/transporter_associated: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[MatE/LTP_2/ABC2_membrane/ABC_tran]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030385 - Cluster 38 - Cyclopeptide

Gene cluster description

Download cluster GenBank file
NC_030385 - Gene Cluster 38. Type = cyclopeptide. Location: 3748614 - 4082049 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Repeatfinder output

Similar gene clusters

NC_030385 - Cluster 39 - Terpene

Gene cluster description

Download cluster GenBank file
NC_030385 - Gene Cluster 39. Type = terpene. Location: 8166456 - 8231255 nt. Click on genes for more information.
Show pHMM detection rules used
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030385 - Cluster 40 - Terpene

Gene cluster description

Download cluster GenBank file
NC_030385 - Gene Cluster 40. Type = terpene. Location: 25641617 - 25760776 nt. Click on genes for more information.
Show pHMM detection rules used
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030385 - Cluster 41 - Putative

Gene cluster description

Download cluster GenBank file
NC_030385 - Gene Cluster 41. Type = putative. Location: 26175445 - 26295711 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030385 - Cluster 42 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030385 - Gene Cluster 42. Type = saccharide. Location: 27069620 - 27129179 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030385 - Cluster 43 - Fatty_acid

Gene cluster description

Download cluster GenBank file
NC_030385 - Gene Cluster 43. Type = fatty_acid. Location: 30191841 - 30353602 nt. Click on genes for more information.
Show pHMM detection rules used
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030385 - Cluster 44 - Terpene

Gene cluster description

Download cluster GenBank file
NC_030385 - Gene Cluster 44. Type = terpene. Location: 34844304 - 34950293 nt. Click on genes for more information.
Show pHMM detection rules used
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030385 - Cluster 45 - Fatty_acid

Gene cluster description

Download cluster GenBank file
NC_030385 - Gene Cluster 45. Type = fatty_acid. Location: 37618486 - 37686419 nt. Click on genes for more information.
Show pHMM detection rules used
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030385 - Cluster 46 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030385 - Gene Cluster 46. Type = saccharide. Location: 38399569 - 38464139 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030385 - Cluster 47 - Polyketide-saccharide-transporter_associated

Gene cluster description

Download cluster GenBank file
NC_030385 - Gene Cluster 47. Type = polyketide-saccharide-transporter_associated. Location: 40529940 - 40989708 nt. Click on genes for more information.
Show pHMM detection rules used
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))
plants/transporter_associated: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[MatE/LTP_2/ABC2_membrane/ABC_tran]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030385 - Cluster 48 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030385 - Gene Cluster 48. Type = saccharide. Location: 44670700 - 44698549 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030386 - Cluster 49 - Polyketide

Gene cluster description

Download cluster GenBank file
NC_030386 - Gene Cluster 49. Type = polyketide. Location: 6851357 - 7068693 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030386 - Cluster 50 - Polyketide

Gene cluster description

Download cluster GenBank file
NC_030386 - Gene Cluster 50. Type = polyketide. Location: 20138382 - 20224321 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030386 - Cluster 51 - Cyclopeptide

Gene cluster description

Download cluster GenBank file
NC_030386 - Gene Cluster 51. Type = cyclopeptide. Location: 20517022 - 20861119 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Repeatfinder output

Repeat found in LOC108226040
Repeat occurs 15 times in a sequence of 593 amino acids
Location between 20705097 and 20722210
Coverage of 25.3 %
Instances:
PRPNISAYHD | PRPNISSYHG | PRPNVSAYHD | PRPNVSSYHD | PRPNVSAYHD
PRPNISSYHD | PRPNVSSYHD | PRPNVSSYHD | PRPNVSSYHD | PRPNVSSYHD
PRPNVSSYHD | PRPNISAYQG | PRPNVSSYHD | PRPNVSSYDD | PRPNISIYQE

pattern: PRPN[VI]S[SIA]Y[QDH][GED]
The following known motifs were found:
VS[AI]Y was found 2 times in this sequence
MYLRSWGVDLLERNRWKWPEISESPPGELESPLMEVAPSEVKARLPWSNLRDSSDEETEDEGS
RTFIAPSVTSLEEAKKISIAAINRQPPYPLPPLNPEIPENPKAPVVTYNPTSVIFKKKKDSETT
AIPLTEIGKFSSKRIIRAVAAVKLSVVKEDKSIGSPSYARPQPAQYWRTVMKDEAMPEAIQGLM
EARESGPPLISHNNLKSDCHTSTATGTAFNNKKSRLSARDIEPRPNISAYHDDEKLKKGNAHVD
DIEPRPNISSYHGDEKLRNNESFDKDIEPRPNVSAYHDHDDEKLKKGNFYRDDIEPRPNVSSYH
DDEKLRNNESFDKDIEPRPNVSAYHDHDDEKLKKGNSNMDDIEPRPNISSYHDNEKLRNNESFD
KDIEPRPNVSSYHDDEKLKESDSFSKDIEPRPNVSSYHDGEKLRDNESFDKDIEPRPNVSSYHD
DANLKKSDSFSKDIEPRPNVSSYHDGEKLRDNESFDKDIEPRPNVSSYHDDANLKKSDSFSKDI
EPRPNISAYQGDKKLTENESFIKDIEPRPNVSSYHDDDKLTKTDAFTKDIEPRPNVSSYDDNEA
LKEDKSYADDLKPRPNISIYQE
Repeat found in LOC108227604
Repeat occurs 16 times in a sequence of 475 amino acids
Location between 20734969 and 20736835
Coverage of 30.32 %
Instances:
RPNISAYHD | RPNISSYRG | RPNISAYHD | RPNISSYHD | RPNISAYHD
RPNISSYHD | RPNISSYHD | RPNISSYHD | RPNISAYHD | RPNISSYHD
RPNISSYHD | RPNISSYHD | RPNISAYQG | RPNISSYHD | RPNISAYND
RPNISIYQE |
pattern: RPNIS[SIA]Y[NQRH][GED]
MMASPSAFCAVLYLLLIGSPSYARPQPAEYWRTVMKDEAMPEAIQGLMEVSESGPPLISHNNL
KPDCHTSTATGTAFNNRKSRLSARDIEPRPNISAYHDDEKLKKGNAHVDDIEPRPNISSYRGDK
KLRDNESFDKDIEPRPNISAYHDDEKLKKGNSYRDDIEPRPNISSYHDDEKLRNDESFDKDIEP
RPNISAYHDDEKLKKGNSYMDDIEPRPNISSYHDDEKLRNNESFDKDIEPRPNISSYHDDEKLQ
KSDSFSKDIEPRPNISSYHDEEKLRNDESFDKNIEPRPNISAYHDGEKLTENESFDKDIEPRPN
ISSYHDDEKLKKSDSFSKDIEPRPNISSYHDDEKLRDTESFDKDIEARPNISSYHDDEKLKKND
SFSKDIEPRPNISAYQGDKKLTENESFIRDIEPRPNISSYHDDEKLKKTDAFTKDIEPRPNISA
YNDNEALKEDKSYDDDLKPRPNISIYQE

Similar gene clusters

NC_030386 - Cluster 52 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030386 - Gene Cluster 52. Type = saccharide. Location: 28875839 - 28997360 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030386 - Cluster 53 - Putative

Gene cluster description

Download cluster GenBank file
NC_030386 - Gene Cluster 53. Type = putative. Location: 34223475 - 34336083 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030386 - Cluster 54 - Putative

Gene cluster description

Download cluster GenBank file
NC_030386 - Gene Cluster 54. Type = putative. Location: 34814374 - 34926982 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030386 - Cluster 55 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030386 - Gene Cluster 55. Type = saccharide. Location: 35414813 - 35520694 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030386 - Cluster 56 - Alkaloid

Gene cluster description

Download cluster GenBank file
NC_030386 - Gene Cluster 56. Type = alkaloid. Location: 35800351 - 35827455 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030387 - Cluster 57 - Fatty_acid-saccharide

Gene cluster description

Download cluster GenBank file
NC_030387 - Gene Cluster 57. Type = fatty_acid-saccharide. Location: 5142379 - 5237110 nt. Click on genes for more information.
Show pHMM detection rules used
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030387 - Cluster 58 - Alkaloid

Gene cluster description

Download cluster GenBank file
NC_030387 - Gene Cluster 58. Type = alkaloid. Location: 6373675 - 6461251 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030387 - Cluster 59 - Putative

Gene cluster description

Download cluster GenBank file
NC_030387 - Gene Cluster 59. Type = putative. Location: 8248802 - 8380827 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030387 - Cluster 60 - Alkaloid-saccharide

Gene cluster description

Download cluster GenBank file
NC_030387 - Gene Cluster 60. Type = alkaloid-saccharide. Location: 13250422 - 13304537 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030387 - Cluster 61 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030387 - Gene Cluster 61. Type = saccharide. Location: 13670922 - 13736230 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030387 - Cluster 62 - Putative

Gene cluster description

Download cluster GenBank file
NC_030387 - Gene Cluster 62. Type = putative. Location: 32369146 - 32422379 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030387 - Cluster 63 - Cyclopeptide

Gene cluster description

Download cluster GenBank file
NC_030387 - Gene Cluster 63. Type = cyclopeptide. Location: 38820106 - 39116981 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Repeatfinder output

Similar gene clusters

NC_030388 - Cluster 64 - Fatty_acid-saccharide

Gene cluster description

Download cluster GenBank file
NC_030388 - Gene Cluster 64. Type = fatty_acid-saccharide. Location: 12360668 - 12464054 nt. Click on genes for more information.
Show pHMM detection rules used
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030388 - Cluster 65 - Sesterterpene

Gene cluster description

Download cluster GenBank file
NC_030388 - Gene Cluster 65. Type = sesterterpene. Location: 16039372 - 16108877 nt. Click on genes for more information.
Show pHMM detection rules used
plants/sesterterpene: (minimum(2,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth_C,polyprenyl_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

No significant ClusterBlast hits found.

NC_030388 - Cluster 66 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030388 - Gene Cluster 66. Type = saccharide. Location: 17243895 - 17455581 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030388 - Cluster 67 - Terpene-saccharide

Gene cluster description

Download cluster GenBank file
NC_030388 - Gene Cluster 67. Type = terpene-saccharide. Location: 19991784 - 20236214 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030388 - Cluster 68 - Fatty_acid

Gene cluster description

Download cluster GenBank file
NC_030388 - Gene Cluster 68. Type = fatty_acid. Location: 22746859 - 22791298 nt. Click on genes for more information.
Show pHMM detection rules used
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

Similar known gene clusters

NC_030388 - Cluster 69 - Polyketide

Gene cluster description

Download cluster GenBank file
NC_030388 - Gene Cluster 69. Type = polyketide. Location: 26173944 - 26252470 nt. Click on genes for more information.
Show pHMM detection rules used
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030388 - Cluster 70 - Terpene-saccharide

Gene cluster description

Download cluster GenBank file
NC_030388 - Gene Cluster 70. Type = terpene-saccharide. Location: 28559141 - 28634073 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030388 - Cluster 71 - Terpene

Gene cluster description

Download cluster GenBank file
NC_030388 - Gene Cluster 71. Type = terpene. Location: 29295766 - 29368066 nt. Click on genes for more information.
Show pHMM detection rules used
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030388 - Cluster 72 - Putative

Gene cluster description

Download cluster GenBank file
NC_030388 - Gene Cluster 72. Type = putative. Location: 29513716 - 29605863 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030388 - Cluster 73 - Alkaloid

Gene cluster description

Download cluster GenBank file
NC_030388 - Gene Cluster 73. Type = alkaloid. Location: 29639474 - 29720613 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030388 - Cluster 74 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030388 - Gene Cluster 74. Type = saccharide. Location: 31312356 - 31424724 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030388 - Cluster 75 - Cyclopeptide

Gene cluster description

Download cluster GenBank file
NC_030388 - Gene Cluster 75. Type = cyclopeptide. Location: 32208632 - 32462362 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Repeatfinder output

Repeat found in LOC108199439
Repeat occurs 3 times in a sequence of 422 amino acids
Location between 32229011 and 32231993
Coverage of 4.27 %
Instances:
FDEDDD | FDEEEG | FDEDED |
pattern: FDE[ED][ED][GD]
MLATGARPLFPLFNTAQETQSSNFSQFFTKFSPTHLSFHSNKLTHFGFCVVLGKIRNGLGPFA
AKSPRKGVNDVLEIEGFDEDDDFEELDDDFDEEEGDFDEDEDMIVPMRNMKEWLENKPLGFGEG
KVYDTTIEDKLAEEIEQSRIAQLANLNKLKNNPGSGSSKNQQKPKVPEVVSSGIRVRLVNLPKK
KNIIRDLQRAFKGFPGMINISPVVSGSKKTREPICTGIAFIYFKSTDDANRFIQTFSRQSIAFG
KIQKQIKLELMDSSSAKTASEKLVGSNSGPRLAYISANNDLDATSDIETPASNSKDISGEYDSE
DDEHISAVEEEERETVEVFSMVEHSEDDDSMMPKEESLSNALSSQPLKKNRTKKKKIVVKGKQK
KSAKLNIPGSAKRLKIKEKAVLTDVFSKYGQKADAAVVK
Repeat found in LOC108197280
Repeat occurs 3 times in a sequence of 500 amino acids
Location between 32296129 and 32298772
Coverage of 4.2 %
Instances:
LLVLFSG | LLVLDSA | LLVIDRG |
pattern: LLV[IL][DF][SR][GA]
MAQVKNVIVFALTLLVLFSGSCAASSATSPAKIVNGLVSNAMSIVMKWLLSLKTTTKTAMTGR
PMMRFESGYTVETVFDGSKLGIEPYSVEVSSSGDLLVLDSANSNLYKISSSLSQFTRPKLIAGS
ADGYYGHIDGKPREARMNHPKGITVDDRGNIYVADTANTAIRKISDAGVTTIAGGKSGKGGGHV
DGRSEDAKFSSDFDVVYLGSSCSLLVIDRGYKAIREIQLPFDDCAYNYDSGFPLGIAVLLAAGF
FGYMLALLQRRVNSIVSSQNDQRTTETIHTSGPYQKPLKSSVRPPLIPNEDEQEKPEEGFIGSL
GKLISSTGEAAMEILGGIFPGLRKKHISVQFPDQQEFQQEYKYSNTWPVQDSFVVPAEDEPPSI
ETRTPTPRKTYPFMSQDVEKMQQFRQSRKFYSGLDGEPQQQQAVQTQRHHHRHFSSIPETYYEQ
SAEKTNEILFGAVQEQNKQQESVIKPLDYGNTTYDRRATSRSRISSRGNSYTS
Repeat found in LOC108198739
Repeat occurs 4 times in a sequence of 224 amino acids
Location between 32370871 and 32371546
Coverage of 19.64 %
Instances:
FGFDKRFSSSK | FGFDKRFPSGK | FGFDKRFPSGR | FGFDKRFPSGK |
pattern: FGFDKRF[SP]S[SG][KR]
MSQPVLQVYSPPFPTQVMTRPAAAHHSHESFGTVFIVLAVIVVISAIACVLGRICSRRQGHPK
GAYRSRDKEPRQNHHSQPKEGDIEFGFDKRFSSSKVAANEDFGGPNVKFGFDKRFPSGKGPANE
EPRGPQAFHNGADGGEGGAQFGFDKRFPSGREATNEELRGPTTFHSAATSRGEGSIEFGFDKRF
PSGKGPANEGIRGHKPIHNGQSKRVTRFAGDGN

Similar gene clusters

NC_030389 - Cluster 76 - Cyclopeptide

Gene cluster description

Download cluster GenBank file
NC_030389 - Gene Cluster 76. Type = cyclopeptide. Location: 723709 - 949355 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Repeatfinder output

Repeat found in LOC108200990
Repeat occurs 9 times in a sequence of 261 amino acids
Location between 807038 and 807824
Coverage of 37.93 %
Instances:
KRLIIILQIIL | KRLVPSGPNPE | KRLVPSGPNPE | KRLVPSGPNPE | KRLIPTGPNPK
KRLVPTGPNPK | KRLVPSGPNPK | KRLVPTGPNPK | KRLVPSGPNPE |
pattern: KRL[VI][PI][STI][GL][PQ][NI][PI][KLE]
MAPNNSVAAKRLIIILQIILAVFLSFSANSEARLMIHDRSSLALFHKLGFKLPVHNTGAAKRL
VPSGPNPEKSPGTPPGVVGAGEVKRLVPSGPNPETSPGTPPPGAGEVKRLVPSGPNPETSPGTP
PPGASESKRLIPTGPNPKTSPGTPPPGAGEAKRLVPTGPNPKKSPGTPPPGAGEVKRLVPSGPN
PKKSPGTPPGVVGAGEVKRLVPTGPNPKKSPGTPPDVVGAGEVKRLVPSGPNPETSPGTPPPGV
LGATLP

Similar gene clusters

NC_030389 - Cluster 77 - Fatty_acid

Gene cluster description

Download cluster GenBank file
NC_030389 - Gene Cluster 77. Type = fatty_acid. Location: 8826240 - 8950828 nt. Click on genes for more information.
Show pHMM detection rules used
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030389 - Cluster 78 - Alkaloid-terpene

Gene cluster description

Download cluster GenBank file
NC_030389 - Gene Cluster 78. Type = alkaloid-terpene. Location: 9007509 - 9375585 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030389 - Cluster 79 - Saccharide

Gene cluster description

Download cluster GenBank file
NC_030389 - Gene Cluster 79. Type = saccharide. Location: 10211034 - 10320213 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030389 - Cluster 80 - Alkaloid

Gene cluster description

Download cluster GenBank file
NC_030389 - Gene Cluster 80. Type = alkaloid. Location: 29874144 - 29952532 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030389 - Cluster 81 - Fatty_acid-alkaloid

Gene cluster description

Download cluster GenBank file
NC_030389 - Gene Cluster 81. Type = fatty_acid-alkaloid. Location: 30025148 - 30142766 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Similar gene clusters

NC_030389 - Cluster 82 - Cyclopeptide

Gene cluster description

Download cluster GenBank file
NC_030389 - Gene Cluster 82. Type = cyclopeptide. Location: 44704081 - 45058453 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

Repeatfinder output

Similar gene clusters