NC_024126.1 - 51 clusters - antiSMASH results

Plant Specialized Metabolite Analysis
Version 2.0

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### Identified secondary metabolite clusters

Cluster | Type | From | To | Size (kb) | Core domains | Product/substrate predicted by subgroup | Most similar known cluster | MIBiG BGC-ID
--- | --- | --- | --- | --- | --- | --- | --- | ---
The following clusters are from record NC_024126.1:
Cluster 1 | Polyketide-Lignan | 4808926 | 4873084 | 64.16 | Chal_sti_synt_C, Dirigent, FAE1_CUT1_RppA, p450 | - | - | -
Cluster 2 | Saccharide | 10097101 | 10325575 | 228.47 | Glyco_hydro_1, Glycos_transf_1, UDPGT_2, adh_short_C2 | flavonoid | - | -
Cluster 3 | Saccharide-Terpene | 13473364 | 13579644 | 106.28 | Cellulose_synt, Terpene_synth, Terpene_synth_C, adh_short | - | - | -
Cluster 4 | Saccharide | 15847001 | 15978677 | 131.68 | Aminotran_3, UDPGT_2, p450 | cyanogenic glucoside-4, monoterpenoid-4 | linamarin/lotaustralin (31% of genes show similarity) | BGC0001318.4_c1
The following clusters are from record NC_024127.1:
Cluster 5 | Saccharide | 586046 | 669705 | 83.66 | Glyco_hydro_1, adh_short | - | - | -
Cluster 6 | Cyclopeptide | 5779563 | 6079004 | 299.44 | BURP | - | - | -
Cluster 7 | Cyclopeptide | 7462790 | 8231914 | 769.12 | BURP | - | - | -
Cluster 8 | Cyclopeptide | 7707724 | 8362310 | 654.59 | BURP | - | - | -
Cluster 9 | Polyketide | 8620763 | 8704864 | 84.10 | ABC2_membrane, ABC_tran, Acetyltransf_1, Chal_sti_synt_C, FAE1_CUT1_RppA, Transferase | - | - | -
Cluster 10 | Saccharide | 8940483 | 8992649 | 52.17 | Epimerase, Glycos_transf_2, UDPGT_2 | - | - | -
Cluster 11 | Cyclopeptide | 8981243 | 9457941 | 476.70 | BURP, Glycos_transf_2, p450 | - | - | -
Cluster 12 | Saccharide | 11043922 | 11095196 | 51.27 | Aminotran_1_2, Glycos_transf_2, SE | - | - | -
Cluster 13 | Cyclopeptide | 18231734 | 18469923 | 238.19 | BURP | - | - | -
Cluster 14 | Transporter_associated | 19508144 | 19724381 | 216.24 | ABC_tran, Abhydrolase_3, Transferase, p450 | - | - | -
Cluster 15 | Saccharide | 26930863 | 27103992 | 173.13 | 2OG-FeII_Oxy, Dimerisation, Methyltransf_2, UDPGT_2 | - | - | -
Cluster 16 | Polyketide-Saccharide | 41789694 | 41917199 | 127.50 | Cellulose_synt, Chal_sti_synt_C, Chal_sti_synt_N, p450 | - | - | -
The following clusters are from record NC_024128.1:
Cluster 17 | Terpene | 1253531 | 1301224 | 47.69 | Epimerase, Terpene_synth, Terpene_synth_C | - | - | -
Cluster 18 | Fatty_acid-Alkaloid | 5301490 | 5546987 | 245.50 | BBE, FAD_binding_4, FA_hydroxylase | - | - | -
Cluster 19 | Putative | 8028424 | 8392255 | 363.83 | 2OG-FeII_Oxy, DIOX_N, Transferase | - | - | -
Cluster 20 | Cyclopeptide | 10690246 | 11703287 | 1013.04 | BURP | - | - | -
Cluster 21 | Alkaloid | 12285551 | 12344424 | 58.87 | Amino_oxidase, Bet_v_1, Methyltransf_11 | - | - | -
Cluster 22 | Saccharide-Terpene | 13001627 | 13282858 | 281.23 | Glyco_hydro_1, Methyltransf_11, Terpene_synth, Terpene_synth_C | - | - | -
Cluster 23 | Polyketide | 18954368 | 19067118 | 112.75 | Abhydrolase_3, Chal_sti_synt_C, Chal_sti_synt_N, Epimerase | - | - | -
The following clusters are from record NC_024129.1:
Cluster 24 | Saccharide | 881318 | 977969 | 96.65 | AMP-binding, Amino_oxidase, Glycos_transf_1, SQS_PSY, adh_short_C2 | - | - | -
Cluster 25 | Transporter_associated | 5282885 | 5398100 | 115.22 | 2OG-FeII_Oxy, ABC2_membrane, ABC_tran, Aminotran_1_2, DIOX_N | - | - | -
Cluster 26 | Saccharide | 14269364 | 14586332 | 316.97 | Glycos_transf_1, UDPGT_2, adh_short, p450 | cyanogenic glucoside-4, monoterpenoid-4 | - | -
Cluster 27 | Saccharide | 15671016 | 15807133 | 136.12 | LTP_2, UDPGT_2, p450 | - | - | -
The following clusters are from record NC_024130.1:
Cluster 28 | Putative | 1877305 | 2148130 | 270.82 | 3Beta_HSD, Amino_oxidase, Epimerase, Methyltransf_11, Transferase | - | - | -
Cluster 29 | Saccharide | 15640102 | 15784889 | 144.79 | Epimerase, GMC_oxred_C, Glycos_transf_1, NAD_binding_4, adh_short, adh_short_C2 | - | QS-21 (11% of genes show similarity) | BGCMANUAL2.1_c1
Cluster 30 | Polyketide-Lignan | 20191791 | 20250784 | 58.99 | Chal_sti_synt_C, Dirigent, FAE1_CUT1_RppA | - | - | -
The following clusters are from record NC_024131.1:
Cluster 31 | Terpene | 1629628 | 1655972 | 26.34 | Acetyltransf_1, Chalcone_2, Terpene_synth, Terpene_synth_C | - | - | -
Cluster 32 | Alkaloid | 3223075 | 3338265 | 115.19 | ABC2_membrane, ABC_tran, Epimerase, GMC_oxred_C, GMC_oxred_N, Pyridoxal_deC | - | - | -
Cluster 33 | Saccharide | 7971352 | 8047120 | 75.77 | Peptidase_S10, UDPGT_2, p450 | flavonoid-3, oleananes-3 | - | -
Cluster 34 | Cyclopeptide | 10698894 | 11105891 | 407.00 | BURP | - | - | -
Cluster 35 | Transporter_associated-Saccharide | 13414243 | 13674843 | 260.60 | 2OG-FeII_Oxy, ABC2_membrane, ABC_tran, DAHP_synth_2, DIOX_N, UDPGT_2 | cyanogenic glucoside, monoterpenoid | - | -
Cluster 36 | Polyketide | 17706963 | 17904400 | 197.44 | Aminotran_1_2, Chal_sti_synt_C, FAE1_CUT1_RppA, adh_short | - | - | -
Cluster 37 | Fatty_acid | 19762454 | 19910096 | 147.64 | ADH_N, ADH_zinc_N, FA_desaturase_2, Peptidase_S10 | - | - | -
Cluster 38 | Saccharide | 20918557 | 21049991 | 131.43 | 2OG-FeII_Oxy, Abhydrolase_3, DIOX_N, Glycos_transf_1 | - | - | -
The following clusters are from record NC_024132.1:
Cluster 39 | Saccharide | 1982419 | 2142662 | 160.24 | Epimerase, Peptidase_S10, UDPGT_2 | - | - | -
Cluster 40 | Alkaloid | 6491801 | 6521752 | 29.95 | Cu_amine_oxid, Epimerase, p450 | - | - | -
Cluster 41 | Lignan | 9656903 | 9709216 | 52.31 | Dirigent, SE | - | - | -
Cluster 42 | Cyclopeptide | 13751415 | 14008936 | 257.52 | BURP | - | - | -
The following clusters are from record NC_024133.1:
Cluster 43 | Putative | 3145406 | 3623324 | 477.92 | HMGL-like, Peptidase_S10, Transferase, adh_short | - | - | -
Cluster 44 | Terpene | 5399367 | 5535381 | 136.01 | Aminotran_1_2, Terpene_synth, Terpene_synth_C, p450 | - | - | -
Cluster 45 | Saccharide | 8741123 | 8823595 | 82.47 | Glycos_transf_2, p450 | - | - | -
Cluster 46 | Saccharide | 10562576 | 10620989 | 58.41 | UDPGT_2, polyprenyl_synt | small phenolic-2 | - | -
Cluster 47 | Terpene | 14930965 | 14966635 | 35.67 | DIOX_N, ECH_2, Prenyltrans | - | - | -
The following clusters are from record NW_007362524.1:
Cluster 48 | Cyclopeptide | 1 | 152473 | 152.47 | BURP | - | - | -
The following clusters are from record NW_007362547.1:
Cluster 49 | Cyclopeptide | 1 | 93044 | 93.04 | BURP | - | - | -
The following clusters are from record NW_007362718.1:
Cluster 50 | Cyclopeptide | 1 | 26122 | 26.12 | BURP | - | - | -
The following clusters are from record NW_007363025.1:
Cluster 51 | Cyclopeptide | 1 | 8387 | 8.39 | BURP | - | - | -

### NC_024126 - Cluster 1 - Polyketide-lignan

### Gene cluster description

Download cluster GenBank file
NC_024126 - Gene Cluster 1. Type = polyketide-lignan. Location: 4808926 - 4873084 nt. Click on genes for more information.
Show pHMM detection rules used
plants/lignan: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Dirigent]))
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024126 - Cluster 2 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024126 - Gene Cluster 2. Type = saccharide. Location: 10097101 - 10325575 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024126 - Cluster 3 - Saccharide-terpene

### Gene cluster description

Download cluster GenBank file
NC_024126 - Gene Cluster 3. Type = saccharide-terpene. Location: 13473364 - 13579644 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024126 - Cluster 4 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024126 - Gene Cluster 4. Type = saccharide. Location: 15847001 - 15978677 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### Similar known gene clusters

### NC_024127 - Cluster 5 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024127 - Gene Cluster 5. Type = saccharide. Location: 586046 - 669705 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024127 - Cluster 6 - Cyclopeptide

### Gene cluster description

Download cluster GenBank file
NC_024127 - Gene Cluster 6. Type = cyclopeptide. Location: 5779563 - 6079004 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Repeatfinder output

Repeat found in LOC103319685
Repeat occurs 3 times in a sequence of 136 amino acids
Location between 5988599 and 5990292
Coverage of 19.85 %
Instances:
AAAAAVAAE | AAAAVAAEE | AAAVAAEEA |
pattern: AAA[AV][AV][AV][AE][AE][AE]
MEGVTEGVNNLQITDSSYNNKKNRIQVSNTKKPLFFYVNLAKRYMEQNNEVELSALGMAIATV
VTIAEILKNNGLAFEKKITTSTIDMREDAGGRPIQKAKIEILLGKSEKFDEIMAADAAAAAVAA
EEALEYEQS

### Similar gene clusters

### NC_024127 - Cluster 7 - Cyclopeptide

### Gene cluster description

Download cluster GenBank file
NC_024127 - Gene Cluster 7. Type = cyclopeptide. Location: 7462790 - 8231914 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Repeatfinder output

Repeat found in LOC103319958
Repeat occurs 3 times in a sequence of 425 amino acids
Location between 7801095 and 7802373
Coverage of 4.24 %
Instances:
KLTKLT | KLTQLL | KLTKTL |
pattern: KLT[KQ][LT][LT]
MARRHVDRLIHGARHLMAKRKGAVHLNGLLHHCSEESHGEPMPREWYQKEFPKLTKLTQLLKN
VDLVDGRLVNISDGSIIMDDRIEHRMLTFKSLAREFIGSPLVQQTLKNDVVALSGGKICNQFVC
FSKPNEREPMVVKTLSVVSGFLNITAQQRQSVRVTLSPQITQHRIWTGTLKEVLNGLKSELEYL
DHRCPSKGTKMGQQIVASCLKFLADTSTSISYEHDCSSWTRLSPAKVTDSSGLQKWEDVLEMFN
DLIDCLKNERELLLYVAKLEVLKEGLSQIKDVLTDRNIGHKEVRHQESLVQKKLTKTLGHSSKC
LFTLLLYYLFGHVRDIEVDVRGGIYSSGSENDFCLCMGRIVTSDEEEMVWSGVRQLDRALGLFK
FVWETAGMKGALQLQGHIWCVGAEGRTLAYRGNTFFVHGIHV

Repeat found in LOC103319959
Repeat occurs 9 times in a sequence of 389 amino acids
Location between 7809859 and 7811215
Coverage of 34.7 %
Instances:
PLGNKHYTQKGYGKG | PLGNKHYTQKGYGKG | PLGNKHYTQKGYGKG | PLGNKHYTQKGYGKG | PLGNKHYTQKGYGKG
PLGNKHYTQKGYGKG | PLGNKHYTQKGYGKG | PLGNKHYTQKGYGKG | PLGNKDLAIFFLEKD |
pattern: PLGNK[HD][YL][AT][IQ][FK][FG][YL][GE]K[GD]
MLLNQHLNFTGTRSCQTHRCQDPLGNKHYTQKGYGKGKPETFPLGNKHYTQKGYGKGKPETYP
LGNKHYTQKGYGKGKPETFPLGNKHYTQKGYGKGKPETYPLGNKHYTQKGYGKGKPETFPLGNK
HYTQKGYGKGKPETYPLGNKHYTQKGYGKGKPETFPLGNKHYTQKGYGKGKPETYPLGNKDLAI
FFLEKDMRPGTTMKFQFPRNSNTATFLPRESTQSIPFSSNKLPEILNHFSVKPPSVEAKTIKQT
IEECEAPGIKGEEIYCATSLESMVDFSTSKLRTRNVQAISTEVLEKGATMSIHKYTTMPGLKKL
AGDNVVVCHKQNYPYAVFYCHAIKPTAAYVLSLKGDDGVKVKAVAICHLDTSEWNPKHLAFQIL
KIIETA

Repeat found in LOC103319963
Repeat occurs 3 times in a sequence of 289 amino acids
Location between <7848788 and 7849658
Coverage of 10.38 %
Instances:
PPPSDEGKPE | PPPSDEGKPE | PPPSDSQLLH |
pattern: PPPSD[SE][GQ][LK][PL][HE]
PPPSDEGKPESFPLGNKRYTQSHYGKGPPPSDEGKPENIPLERSGYQRKNYGKAPPPSDSQLL
HYKELAIFFFEKDMRPGATMKFQFPRSSNTATFLPRESAQSIPFSSNKLPEIFNHFSLKPTSVE
AKTIKETIEECEAPGLKGEEKYCATSLESMVDFSTSKLGTRNVEAISTEVLERGATMSMHNYTT
MPGLKKLAGDKVVVCHKENYPYAVYFCHAIKQTAAYVLSLKGDDGEKVKAVTICHLDTSEWNPE
HLSFKILNVKPGTVAICHFISTDGIVWVPKHKSA

Repeat found in LOC103319972
Repeat occurs 5 times in a sequence of 354 amino acids
Location between 8007966 and 8009337
Coverage of 21.19 %
Instances:
GYGKGKPVQKGYGKG | GYGKGKPVQKGYGKG | GYGKGKPVQKGYGKG | GYGKGKPVQKGYGKR | GYGKRSPPSDNQLLH
pattern: GYGK[RG][SK]P[PV][SQ][KD][GN][YQ][LG][LK][RGH]
MGFHLPLIFAILSLAAVALANHAAQPAPQLYWNSVLPNTQMPRAISELLHPDSTNEEKSKPEN
FPLANKNYLQQGYGKGKPVQKGYGKGKPVQKGYGKGKPVQKGYGKGKPVQKGYGKRSPPSDNQL
LHYKELAIFFFEKDMRPGTTMKFQFPRNSNTATFLSRESAQSIPFSSNKLPEIFNHFSVKPTSV
EAQTIKQTIEGCEALGIKGEEKYCATSLESMVDFSTSKLGTRNVEAISTEVLESGATMSMHNYT
TMPGLKKLAGDKVVVCHKENYPYAVFFCHAIKQTAAYVLSLKGDDGEKVKAVTICHLDTSEWDP
EHLSFQILNVKPGTVPICHFISTDAIAWVPKHKSA

Repeat found in LOC103319972
Repeat occurs 5 times in a sequence of 354 amino acids
Location between 8007966 and 8009337
Coverage of 21.19 %
Instances:
GYGKGKPVQKGYGKG | GYGKGKPVQKGYGKG | GYGKGKPVQKGYGKG | GYGKGKPVQKGYGKR | GYGKRSPPSDNQLLH
pattern: GYGK[RG][SK]P[PV][SQ][KD][GN][YQ][LG][LK][RGH]
MGFHLPLIFAILSLAAVALANHAAQPAPQLYWNSVLPNTQMPRAISELLHPDSTNEEKSKPEN
FPLANKNYLQQGYGKGKPVQKGYGKGKPVQKGYGKGKPVQKGYGKGKPVQKGYGKRSPPSDNQL
LHYKELAIFFFEKDMRPGTTMKFQFPRNSNTATFLSRESAQSIPFSSNKLPEIFNHFSVKPTSV
EAQTIKQTIEGCEALGIKGEEKYCATSLESMVDFSTSKLGTRNVEAISTEVLESGATMSMHNYT
TMPGLKKLAGDKVVVCHKENYPYAVFFCHAIKQTAAYVLSLKGDDGEKVKAVTICHLDTSEWDP
EHLSFQILNVKPGTVPICHFISTDAIAWVPKHKSA

Repeat found in LOC103319972
Repeat occurs 4 times in a sequence of 344 amino acids
Location between 8007966 and 8009337
Coverage of 16.28 %
Instances:
GYGKGKPVQKGYGK | GYGKGKPVQKGYGK | GYGKGKPVQKGYGK | GYGKRSPPSDNQLL |
pattern: GYGK[RG][SK]P[PV][SQ][KD][GN][YQ][LG][LK]
MGFHLPLIFAILSLAAVALANHAAQPAPQLYWNSVLPNTQMPRAISELLHPDSTNEEKSKPEN
FPLANKNYLQQGYGKGKPVQKGYGKGKPVQKGYGKGKPVQKGYGKRSPPSDNQLLHYKELAIFF
FEKDMRPGTTMKFQFPRNSNTATFLSRESAQSIPFSSNKLPEIFNHFSVKPTSVEAQTIKQTIE
GCEALGIKGEEKYCATSLESMVDFSTSKLGTRNVEAISTEVLESGATMSMHNYTTMPGLKKLAG
DKVVVCHKENYPYAVFFCHAIKQTAAYVLSLKGDDGEKVKAVTICHLDTSEWDPEHLSFQILNV
KPGTVPICHFISTDAIAWVPKHKSA

Repeat found in LOC103319971
Repeat occurs 3 times in a sequence of 378 amino acids
Location between 8020439 and 8062067
Coverage of 4.76 %
Instances:
PPPSDE | PPPSER | PPPSDK |
pattern: PPPS[ED][RKE]
MGFHLPLIFALLSLAAVALANHAAQPAPQLYWNSVLPNTQMPRSISELLHPDSTSEEKSTYIV
NAVGNGKGKPEIFPLMSNRNYVQSHYGVLNRNYIQSHYRKCPPPSDEGKPENIPLARSGYSRKR
YGVGPPPSERKRCARGPPPSDKQLLHYKELAIFFFEKDMRPGATMKFQFTRNSNTATFLPRKSA
QSIPFSSNKLPEIFNHFSVKPTSVEAQTIKQTIEGCEALGIKGEEKYCATSLESMIDFSTSKLG
TRNVEAISTEVLESGATMSMHNYTTMPGLKKLEGDEVVVCHKENYPYAVFFCHAIKQTAAYVLS
LKGDDGEKVKAVTICHLDTSEWDPEHLSFQILNVKPGTVPICHFISTDAIAWVPKHKSA

Repeat found in LOC103319971
Repeat occurs 3 times in a sequence of 378 amino acids
Location between 8060630 and 8062067
Coverage of 4.76 %
Instances:
PPPSDE | PPPSER | PPPSDK |
pattern: PPPS[ED][RKE]
MGFHLPLIFVILSLAAVALANHAAQPAPQLYWNSVLPNTQMPRSISELLHPDSTSEEKSTYIV
NAVGNGKGKPEIFPLMSNRNYVQSHYGVLNRNYIQSHYRKCPPPSDEGKPENIPLARSGYSRKR
YGVGPPPSERKRCARGPPPSDKQLLHYKELAIFFFEKDMRPGATMKFQFTRNSNTATFLPRKSA
QSIPFSSNKLPEIFNHFSVKPTSVEAQTIKQTIEGCEALGIKGEEKYCATSLESMIDFSTSKLG
TRNVEAISTEVLESGATMSMHNYTTMPGLKKLEGDEVVVCHKENYPYAVFFCHAIKQTAAYVLS
LKGDDGEKVKAVTICHLDTSEWDPEHLSFQILNVKPGTVPICHFISTDAIAWVPKHKSA

Repeat found in LOC103319989
Repeat occurs 4 times in a sequence of 589 amino acids
Location between 8106405 and 8108735
Coverage of 4.07 %
Instances:
TYNTFI | TYNTIL | TYNALI | TYNLLI |
pattern: TYN[ALT][FLI][LI]
MALVIACGESSPSHITLLRCLNRTLDSIKHNIARIFVNILCCQAKSDESSWTCRGKDLLPSTF
EDFRKKWDENYHMSAQNWFSKKKNSRGKQDPHAVCNVLDAMLRDSLERLKTMREGISTANIGFL
DCTLKANYTDCMAIIKVLCIDGKLGTAFWLRRKLIKKGIVPDILTHNYLLNGLCKTGDLEKADW
LIREMLENGPSPNCATYNTFIKGYCRLNDVDKALYLLSTMGNSGIRPNRITCNIIVHALCKKGL
MENANKLLEDVLDDDNDKTTSDLVISTTLMDGYVKNGSMVQALSLWHDMVQMNIQVDVLSYNVL
IHGFCLSQHMDLAYGYLCEMIKRGILPSVFTYNTILSGLCKGGKLEEACYVHGLMSRMGVTPDQ
ISYKILVRGLCSKGDVVRANEFLLHMLEKSVVPETLIWNTVIDCYGRYGDLTTAFSVKDQMLAF
GVKPNVYTYNALIHAQVKEGNITRALSHKKEMLLSGLFPNVVTYNLLIGAACNLGDILFAVQLY
REMLITGLDPDMITYTELIRGYCMIGNMKKAEELFENIQASGLPIDHVPFKVLVKQYCKIMEPD
MAFGIYQKWLTRGN

Repeat found in LOC103319996
Repeat occurs 11 times in a sequence of 810 amino acids
Location between 8140890 and 8143523
Coverage of 8.15 %
Instances:
RRHDSD | RRHDSD | RRHDSE | RRHEND | RRHGKI
RRHGND | RRHAED | RRHEND | RRHGED | RRHGNI
RRHGNI |
pattern: RRH[AGED][SNKE][IED]
MYNGIGLQTPRGSGTNGYIQTNKFFIKSRTGKVADSSRGFDDDQGMGGVMKKANKDILEHDRK
RQIQLKLVVLEDKLTDQGFTDAEIAEKLQEARKTPVVISDKKVSDTQTHQIAARKEKQMETLRA
ALGLASSDLTEKDTDEVDDGLKSSRKNGPNDDGRPQERSEHAFLDRDYSRKKHGEEKQKAEKDD
KKKSVKESRRNKKEESRKKRHKYDSSDTDNSGSPPKADKKKKRRGTSSSDEDDSEVDVGKKHKV
AKKHNKRRNENTDDSDSATSDDDAKDSSRKKVNKFKKPHRRHDSDEDDSEVDGRKKQKVVKKHD
NSRKNDTDDSDSATSDDGAEGRSRKEVEKSKQPRRRHDSDEDSGSDKDFSKSRAEKEKLHVKPS
RRHDSEDESDSDSRMERKKSQVEKQRNQHGSRKVERDNFVVEDDNKGNNVKSGKSRKNYDVDDE
SDYERSRKSRGAITEKSRGSGRIDTDDDVTVEHEDRVHSKDGEPQWVSRRGNQDYEERGGGRSR
SKDDQEHKGRKHGRDEEDHGMRGRHREGENRGRKHGRDEEDHEYRKHRENHEEERGNRKLGKME
EEQGNKDIDRDQVMDYKRAKYDDSRSNERRRHENDKHNEEDPKYRRRVEDVEEERGNRRHGKID
EERGSKETEREKRRHGNDKHNEEHRKYRRHAEDIEEEHGNRRYGKVDEERGSKETERVRRRHEN
DKHNEDDHIYRRHGEDVEEERGIRRHGNIDEEGGSKEPERDRHLDYKRARYDDSRRHGNIDEEG
GSKETERDRHLDYKRARYDDSRSSERRRYENDKHNDGRSRNRD

Repeat found in LOC103319996
Repeat occurs 11 times in a sequence of 810 amino acids
Location between 8140890 and 8143523
Coverage of 8.15 %
Instances:
RRHDSD | RRHDSD | RRHDSE | RRHEND | RRHGKI
RRHGND | RRHAED | RRHEND | RRHGED | RRHGNI
RRHGNI |
pattern: RRH[AGED][SNKE][IED]
MYNGIGLQTPRGSGTNGYIQTNKFFIKSRTGKVADSSRGFDDDQGMGGVMKKANKDILEHDRK
RQIQLKLVVLEDKLTDQGFTDAEIAEKLQEARKTPVVISDKKVSDTQTHQIAARKEKQMETLRA
ALGLASSDLTEKDTDEVDDGLKSSRKNGPNDDGRPQERSEHAFLDRDYSRKKHGEEKQKAEKDD
KKKSVKESRRNKKEESRKKRHKYDSSDTDNSGSPPKADKKKKRRGTSSSDEDDSEVDVGKKHKV
AKKHNKRRNENTDDSDSATSDDDAKDSSRKKVNKFKKPHRRHDSDEDDSEVDGRKKQKVVKKHD
NSRKNDTDDSDSATSDDGAEGRSRKEVEKSKQPRRRHDSDEDSGSDKDFSKSRAEKEKLHVKPS
RRHDSEDESDSDSRMERKKSQVEKQRNQHGSRKVERDNFVVEDDNKGNNVKSGKSRKNYDVDDE
SDYERSRKSRGAITEKSRGSGRIDTDDDVTVEHEDRVHSKDGEPQWVSRRGNQDYEERGGGRSR
SKDDQEHKGRKHGRDEEDHGMRGRHREGENRGRKHGRDEEDHEYRKHRENHEEERGNRKLGKME
EEQGNKDIDRDQVMDYKRAKYDDSRSNERRRHENDKHNEEDPKYRRRVEDVEEERGNRRHGKID
EERGSKETEREKRRHGNDKHNEEHRKYRRHAEDIEEEHGNRRYGKVDEERGSKETERVRRRHEN
DKHNEDDHIYRRHGEDVEEERGIRRHGNIDEEGGSKEPERDRHLDYKRARYDDSRRHGNIDEEG
GSKETERDRHLDYKRARYDDSRSSERRRYENDKHNDGRSRNRD

Repeat found in LOC103319996
Repeat occurs 11 times in a sequence of 810 amino acids
Location between 8140890 and 8143523
Coverage of 8.15 %
Instances:
RRHDSD | RRHDSD | RRHDSE | RRHEND | RRHGKI
RRHGND | RRHAED | RRHEND | RRHGED | RRHGNI
RRHGNI |
pattern: RRH[AGED][SNKE][IED]
MYNGIGLQTPRGSGTNGYIQTNKFFIKSRTGKVADSSRGFDDDQGMGGVMKKANKDILEHDRK
RQIQLKLVVLEDKLTDQGFTDAEIAEKLQEARKTPVVISDKKVSDTQTHQIAARKEKQMETLRA
ALGLASSDLTEKDTDEVDDGLKSSRKNGPNDDGRPQERSEHAFLDRDYSRKKHGEEKQKAEKDD
KKKSVKESRRNKKEESRKKRHKYDSSDTDNSGSPPKADKKKKRRGTSSSDEDDSEVDVGKKHKV
AKKHNKRRNENTDDSDSATSDDDAKDSSRKKVNKFKKPHRRHDSDEDDSEVDGRKKQKVVKKHD
NSRKNDTDDSDSATSDDGAEGRSRKEVEKSKQPRRRHDSDEDSGSDKDFSKSRAEKEKLHVKPS
RRHDSEDESDSDSRMERKKSQVEKQRNQHGSRKVERDNFVVEDDNKGNNVKSGKSRKNYDVDDE
SDYERSRKSRGAITEKSRGSGRIDTDDDVTVEHEDRVHSKDGEPQWVSRRGNQDYEERGGGRSR
SKDDQEHKGRKHGRDEEDHGMRGRHREGENRGRKHGRDEEDHEYRKHRENHEEERGNRKLGKME
EEQGNKDIDRDQVMDYKRAKYDDSRSNERRRHENDKHNEEDPKYRRRVEDVEEERGNRRHGKID
EERGSKETEREKRRHGNDKHNEEHRKYRRHAEDIEEEHGNRRYGKVDEERGSKETERVRRRHEN
DKHNEDDHIYRRHGEDVEEERGIRRHGNIDEEGGSKEPERDRHLDYKRARYDDSRRHGNIDEEG
GSKETERDRHLDYKRARYDDSRSSERRRYENDKHNDGRSRNRD

### Similar gene clusters

### NC_024127 - Cluster 8 - Cyclopeptide

### Gene cluster description

Download cluster GenBank file
NC_024127 - Gene Cluster 8. Type = cyclopeptide. Location: 7707724 - 8362310 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Repeatfinder output

Repeat found in LOC103319958
Repeat occurs 3 times in a sequence of 425 amino acids
Location between 7801095 and 7802373
Coverage of 4.24 %
Instances:
KLTKLT | KLTQLL | KLTKTL |
pattern: KLT[KQ][LT][LT]
MARRHVDRLIHGARHLMAKRKGAVHLNGLLHHCSEESHGEPMPREWYQKEFPKLTKLTQLLKN
VDLVDGRLVNISDGSIIMDDRIEHRMLTFKSLAREFIGSPLVQQTLKNDVVALSGGKICNQFVC
FSKPNEREPMVVKTLSVVSGFLNITAQQRQSVRVTLSPQITQHRIWTGTLKEVLNGLKSELEYL
DHRCPSKGTKMGQQIVASCLKFLADTSTSISYEHDCSSWTRLSPAKVTDSSGLQKWEDVLEMFN
DLIDCLKNERELLLYVAKLEVLKEGLSQIKDVLTDRNIGHKEVRHQESLVQKKLTKTLGHSSKC
LFTLLLYYLFGHVRDIEVDVRGGIYSSGSENDFCLCMGRIVTSDEEEMVWSGVRQLDRALGLFK
FVWETAGMKGALQLQGHIWCVGAEGRTLAYRGNTFFVHGIHV

Repeat found in LOC103319959
Repeat occurs 9 times in a sequence of 389 amino acids
Location between 7809859 and 7811215
Coverage of 34.7 %
Instances:
PLGNKHYTQKGYGKG | PLGNKHYTQKGYGKG | PLGNKHYTQKGYGKG | PLGNKHYTQKGYGKG | PLGNKHYTQKGYGKG
PLGNKHYTQKGYGKG | PLGNKHYTQKGYGKG | PLGNKHYTQKGYGKG | PLGNKDLAIFFLEKD |
pattern: PLGNK[HD][YL][AT][IQ][FK][FG][YL][GE]K[GD]
MLLNQHLNFTGTRSCQTHRCQDPLGNKHYTQKGYGKGKPETFPLGNKHYTQKGYGKGKPETYP
LGNKHYTQKGYGKGKPETFPLGNKHYTQKGYGKGKPETYPLGNKHYTQKGYGKGKPETFPLGNK
HYTQKGYGKGKPETYPLGNKHYTQKGYGKGKPETFPLGNKHYTQKGYGKGKPETYPLGNKDLAI
FFLEKDMRPGTTMKFQFPRNSNTATFLPRESTQSIPFSSNKLPEILNHFSVKPPSVEAKTIKQT
IEECEAPGIKGEEIYCATSLESMVDFSTSKLRTRNVQAISTEVLEKGATMSIHKYTTMPGLKKL
AGDNVVVCHKQNYPYAVFYCHAIKPTAAYVLSLKGDDGVKVKAVAICHLDTSEWNPKHLAFQIL
KIIETA

Repeat found in LOC103319963
Repeat occurs 3 times in a sequence of 289 amino acids
Location between <7848788 and 7849658
Coverage of 10.38 %
Instances:
PPPSDEGKPE | PPPSDEGKPE | PPPSDSQLLH |
pattern: PPPSD[SE][GQ][LK][PL][HE]
PPPSDEGKPESFPLGNKRYTQSHYGKGPPPSDEGKPENIPLERSGYQRKNYGKAPPPSDSQLL
HYKELAIFFFEKDMRPGATMKFQFPRSSNTATFLPRESAQSIPFSSNKLPEIFNHFSLKPTSVE
AKTIKETIEECEAPGLKGEEKYCATSLESMVDFSTSKLGTRNVEAISTEVLERGATMSMHNYTT
MPGLKKLAGDKVVVCHKENYPYAVYFCHAIKQTAAYVLSLKGDDGEKVKAVTICHLDTSEWNPE
HLSFKILNVKPGTVAICHFISTDGIVWVPKHKSA

Repeat found in LOC103319972
Repeat occurs 5 times in a sequence of 354 amino acids
Location between 8007966 and 8009337
Coverage of 21.19 %
Instances:
GYGKGKPVQKGYGKG | GYGKGKPVQKGYGKG | GYGKGKPVQKGYGKG | GYGKGKPVQKGYGKR | GYGKRSPPSDNQLLH
pattern: GYGK[RG][SK]P[PV][SQ][KD][GN][YQ][LG][LK][RGH]
MGFHLPLIFAILSLAAVALANHAAQPAPQLYWNSVLPNTQMPRAISELLHPDSTNEEKSKPEN
FPLANKNYLQQGYGKGKPVQKGYGKGKPVQKGYGKGKPVQKGYGKGKPVQKGYGKRSPPSDNQL
LHYKELAIFFFEKDMRPGTTMKFQFPRNSNTATFLSRESAQSIPFSSNKLPEIFNHFSVKPTSV
EAQTIKQTIEGCEALGIKGEEKYCATSLESMVDFSTSKLGTRNVEAISTEVLESGATMSMHNYT
TMPGLKKLAGDKVVVCHKENYPYAVFFCHAIKQTAAYVLSLKGDDGEKVKAVTICHLDTSEWDP
EHLSFQILNVKPGTVPICHFISTDAIAWVPKHKSA

Repeat found in LOC103319972
Repeat occurs 5 times in a sequence of 354 amino acids
Location between 8007966 and 8009337
Coverage of 21.19 %
Instances:
GYGKGKPVQKGYGKG | GYGKGKPVQKGYGKG | GYGKGKPVQKGYGKG | GYGKGKPVQKGYGKR | GYGKRSPPSDNQLLH
pattern: GYGK[RG][SK]P[PV][SQ][KD][GN][YQ][LG][LK][RGH]
MGFHLPLIFAILSLAAVALANHAAQPAPQLYWNSVLPNTQMPRAISELLHPDSTNEEKSKPEN
FPLANKNYLQQGYGKGKPVQKGYGKGKPVQKGYGKGKPVQKGYGKGKPVQKGYGKRSPPSDNQL
LHYKELAIFFFEKDMRPGTTMKFQFPRNSNTATFLSRESAQSIPFSSNKLPEIFNHFSVKPTSV
EAQTIKQTIEGCEALGIKGEEKYCATSLESMVDFSTSKLGTRNVEAISTEVLESGATMSMHNYT
TMPGLKKLAGDKVVVCHKENYPYAVFFCHAIKQTAAYVLSLKGDDGEKVKAVTICHLDTSEWDP
EHLSFQILNVKPGTVPICHFISTDAIAWVPKHKSA

Repeat found in LOC103319972
Repeat occurs 4 times in a sequence of 344 amino acids
Location between 8007966 and 8009337
Coverage of 16.28 %
Instances:
GYGKGKPVQKGYGK | GYGKGKPVQKGYGK | GYGKGKPVQKGYGK | GYGKRSPPSDNQLL |
pattern: GYGK[RG][SK]P[PV][SQ][KD][GN][YQ][LG][LK]
MGFHLPLIFAILSLAAVALANHAAQPAPQLYWNSVLPNTQMPRAISELLHPDSTNEEKSKPEN
FPLANKNYLQQGYGKGKPVQKGYGKGKPVQKGYGKGKPVQKGYGKRSPPSDNQLLHYKELAIFF
FEKDMRPGTTMKFQFPRNSNTATFLSRESAQSIPFSSNKLPEIFNHFSVKPTSVEAQTIKQTIE
GCEALGIKGEEKYCATSLESMVDFSTSKLGTRNVEAISTEVLESGATMSMHNYTTMPGLKKLAG
DKVVVCHKENYPYAVFFCHAIKQTAAYVLSLKGDDGEKVKAVTICHLDTSEWDPEHLSFQILNV
KPGTVPICHFISTDAIAWVPKHKSA

Repeat found in LOC103319971
Repeat occurs 3 times in a sequence of 378 amino acids
Location between 8020439 and 8062067
Coverage of 4.76 %
Instances:
PPPSDE | PPPSER | PPPSDK |
pattern: PPPS[ED][RKE]
MGFHLPLIFALLSLAAVALANHAAQPAPQLYWNSVLPNTQMPRSISELLHPDSTSEEKSTYIV
NAVGNGKGKPEIFPLMSNRNYVQSHYGVLNRNYIQSHYRKCPPPSDEGKPENIPLARSGYSRKR
YGVGPPPSERKRCARGPPPSDKQLLHYKELAIFFFEKDMRPGATMKFQFTRNSNTATFLPRKSA
QSIPFSSNKLPEIFNHFSVKPTSVEAQTIKQTIEGCEALGIKGEEKYCATSLESMIDFSTSKLG
TRNVEAISTEVLESGATMSMHNYTTMPGLKKLEGDEVVVCHKENYPYAVFFCHAIKQTAAYVLS
LKGDDGEKVKAVTICHLDTSEWDPEHLSFQILNVKPGTVPICHFISTDAIAWVPKHKSA

Repeat found in LOC103319971
Repeat occurs 3 times in a sequence of 378 amino acids
Location between 8060630 and 8062067
Coverage of 4.76 %
Instances:
PPPSDE | PPPSER | PPPSDK |
pattern: PPPS[ED][RKE]
MGFHLPLIFVILSLAAVALANHAAQPAPQLYWNSVLPNTQMPRSISELLHPDSTSEEKSTYIV
NAVGNGKGKPEIFPLMSNRNYVQSHYGVLNRNYIQSHYRKCPPPSDEGKPENIPLARSGYSRKR
YGVGPPPSERKRCARGPPPSDKQLLHYKELAIFFFEKDMRPGATMKFQFTRNSNTATFLPRKSA
QSIPFSSNKLPEIFNHFSVKPTSVEAQTIKQTIEGCEALGIKGEEKYCATSLESMIDFSTSKLG
TRNVEAISTEVLESGATMSMHNYTTMPGLKKLEGDEVVVCHKENYPYAVFFCHAIKQTAAYVLS
LKGDDGEKVKAVTICHLDTSEWDPEHLSFQILNVKPGTVPICHFISTDAIAWVPKHKSA

Repeat found in LOC103319989
Repeat occurs 4 times in a sequence of 589 amino acids
Location between 8106405 and 8108735
Coverage of 4.07 %
Instances:
TYNTFI | TYNTIL | TYNALI | TYNLLI |
pattern: TYN[ALT][FLI][LI]
MALVIACGESSPSHITLLRCLNRTLDSIKHNIARIFVNILCCQAKSDESSWTCRGKDLLPSTF
EDFRKKWDENYHMSAQNWFSKKKNSRGKQDPHAVCNVLDAMLRDSLERLKTMREGISTANIGFL
DCTLKANYTDCMAIIKVLCIDGKLGTAFWLRRKLIKKGIVPDILTHNYLLNGLCKTGDLEKADW
LIREMLENGPSPNCATYNTFIKGYCRLNDVDKALYLLSTMGNSGIRPNRITCNIIVHALCKKGL
MENANKLLEDVLDDDNDKTTSDLVISTTLMDGYVKNGSMVQALSLWHDMVQMNIQVDVLSYNVL
IHGFCLSQHMDLAYGYLCEMIKRGILPSVFTYNTILSGLCKGGKLEEACYVHGLMSRMGVTPDQ
ISYKILVRGLCSKGDVVRANEFLLHMLEKSVVPETLIWNTVIDCYGRYGDLTTAFSVKDQMLAF
GVKPNVYTYNALIHAQVKEGNITRALSHKKEMLLSGLFPNVVTYNLLIGAACNLGDILFAVQLY
REMLITGLDPDMITYTELIRGYCMIGNMKKAEELFENIQASGLPIDHVPFKVLVKQYCKIMEPD
MAFGIYQKWLTRGN

Repeat found in LOC103319996
Repeat occurs 11 times in a sequence of 810 amino acids
Location between 8140890 and 8143523
Coverage of 8.15 %
Instances:
RRHDSD | RRHDSD | RRHDSE | RRHEND | RRHGKI
RRHGND | RRHAED | RRHEND | RRHGED | RRHGNI
RRHGNI |
pattern: RRH[AGED][SNKE][IED]
MYNGIGLQTPRGSGTNGYIQTNKFFIKSRTGKVADSSRGFDDDQGMGGVMKKANKDILEHDRK
RQIQLKLVVLEDKLTDQGFTDAEIAEKLQEARKTPVVISDKKVSDTQTHQIAARKEKQMETLRA
ALGLASSDLTEKDTDEVDDGLKSSRKNGPNDDGRPQERSEHAFLDRDYSRKKHGEEKQKAEKDD
KKKSVKESRRNKKEESRKKRHKYDSSDTDNSGSPPKADKKKKRRGTSSSDEDDSEVDVGKKHKV
AKKHNKRRNENTDDSDSATSDDDAKDSSRKKVNKFKKPHRRHDSDEDDSEVDGRKKQKVVKKHD
NSRKNDTDDSDSATSDDGAEGRSRKEVEKSKQPRRRHDSDEDSGSDKDFSKSRAEKEKLHVKPS
RRHDSEDESDSDSRMERKKSQVEKQRNQHGSRKVERDNFVVEDDNKGNNVKSGKSRKNYDVDDE
SDYERSRKSRGAITEKSRGSGRIDTDDDVTVEHEDRVHSKDGEPQWVSRRGNQDYEERGGGRSR
SKDDQEHKGRKHGRDEEDHGMRGRHREGENRGRKHGRDEEDHEYRKHRENHEEERGNRKLGKME
EEQGNKDIDRDQVMDYKRAKYDDSRSNERRRHENDKHNEEDPKYRRRVEDVEEERGNRRHGKID
EERGSKETEREKRRHGNDKHNEEHRKYRRHAEDIEEEHGNRRYGKVDEERGSKETERVRRRHEN
DKHNEDDHIYRRHGEDVEEERGIRRHGNIDEEGGSKEPERDRHLDYKRARYDDSRRHGNIDEEG
GSKETERDRHLDYKRARYDDSRSSERRRYENDKHNDGRSRNRD

Repeat found in LOC103319996
Repeat occurs 11 times in a sequence of 810 amino acids
Location between 8140890 and 8143523
Coverage of 8.15 %
Instances:
RRHDSD | RRHDSD | RRHDSE | RRHEND | RRHGKI
RRHGND | RRHAED | RRHEND | RRHGED | RRHGNI
RRHGNI |
pattern: RRH[AGED][SNKE][IED]
MYNGIGLQTPRGSGTNGYIQTNKFFIKSRTGKVADSSRGFDDDQGMGGVMKKANKDILEHDRK
RQIQLKLVVLEDKLTDQGFTDAEIAEKLQEARKTPVVISDKKVSDTQTHQIAARKEKQMETLRA
ALGLASSDLTEKDTDEVDDGLKSSRKNGPNDDGRPQERSEHAFLDRDYSRKKHGEEKQKAEKDD
KKKSVKESRRNKKEESRKKRHKYDSSDTDNSGSPPKADKKKKRRGTSSSDEDDSEVDVGKKHKV
AKKHNKRRNENTDDSDSATSDDDAKDSSRKKVNKFKKPHRRHDSDEDDSEVDGRKKQKVVKKHD
NSRKNDTDDSDSATSDDGAEGRSRKEVEKSKQPRRRHDSDEDSGSDKDFSKSRAEKEKLHVKPS
RRHDSEDESDSDSRMERKKSQVEKQRNQHGSRKVERDNFVVEDDNKGNNVKSGKSRKNYDVDDE
SDYERSRKSRGAITEKSRGSGRIDTDDDVTVEHEDRVHSKDGEPQWVSRRGNQDYEERGGGRSR
SKDDQEHKGRKHGRDEEDHGMRGRHREGENRGRKHGRDEEDHEYRKHRENHEEERGNRKLGKME
EEQGNKDIDRDQVMDYKRAKYDDSRSNERRRHENDKHNEEDPKYRRRVEDVEEERGNRRHGKID
EERGSKETEREKRRHGNDKHNEEHRKYRRHAEDIEEEHGNRRYGKVDEERGSKETERVRRRHEN
DKHNEDDHIYRRHGEDVEEERGIRRHGNIDEEGGSKEPERDRHLDYKRARYDDSRRHGNIDEEG
GSKETERDRHLDYKRARYDDSRSSERRRYENDKHNDGRSRNRD

Repeat found in LOC103319996
Repeat occurs 11 times in a sequence of 810 amino acids
Location between 8140890 and 8143523
Coverage of 8.15 %
Instances:
RRHDSD | RRHDSD | RRHDSE | RRHEND | RRHGKI
RRHGND | RRHAED | RRHEND | RRHGED | RRHGNI
RRHGNI |
pattern: RRH[AGED][SNKE][IED]
MYNGIGLQTPRGSGTNGYIQTNKFFIKSRTGKVADSSRGFDDDQGMGGVMKKANKDILEHDRK
RQIQLKLVVLEDKLTDQGFTDAEIAEKLQEARKTPVVISDKKVSDTQTHQIAARKEKQMETLRA
ALGLASSDLTEKDTDEVDDGLKSSRKNGPNDDGRPQERSEHAFLDRDYSRKKHGEEKQKAEKDD
KKKSVKESRRNKKEESRKKRHKYDSSDTDNSGSPPKADKKKKRRGTSSSDEDDSEVDVGKKHKV
AKKHNKRRNENTDDSDSATSDDDAKDSSRKKVNKFKKPHRRHDSDEDDSEVDGRKKQKVVKKHD
NSRKNDTDDSDSATSDDGAEGRSRKEVEKSKQPRRRHDSDEDSGSDKDFSKSRAEKEKLHVKPS
RRHDSEDESDSDSRMERKKSQVEKQRNQHGSRKVERDNFVVEDDNKGNNVKSGKSRKNYDVDDE
SDYERSRKSRGAITEKSRGSGRIDTDDDVTVEHEDRVHSKDGEPQWVSRRGNQDYEERGGGRSR
SKDDQEHKGRKHGRDEEDHGMRGRHREGENRGRKHGRDEEDHEYRKHRENHEEERGNRKLGKME
EEQGNKDIDRDQVMDYKRAKYDDSRSNERRRHENDKHNEEDPKYRRRVEDVEEERGNRRHGKID
EERGSKETEREKRRHGNDKHNEEHRKYRRHAEDIEEEHGNRRYGKVDEERGSKETERVRRRHEN
DKHNEDDHIYRRHGEDVEEERGIRRHGNIDEEGGSKEPERDRHLDYKRARYDDSRRHGNIDEEG
GSKETERDRHLDYKRARYDDSRSSERRRYENDKHNDGRSRNRD

### Similar gene clusters

### NC_024127 - Cluster 9 - Polyketide

### Gene cluster description

Download cluster GenBank file
NC_024127 - Gene Cluster 9. Type = polyketide. Location: 8620763 - 8704864 nt. Click on genes for more information.
Show pHMM detection rules used
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024127 - Cluster 10 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024127 - Gene Cluster 10. Type = saccharide. Location: 8940483 - 8992649 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024127 - Cluster 11 - Cyclopeptide

### Gene cluster description

Download cluster GenBank file
NC_024127 - Gene Cluster 11. Type = cyclopeptide. Location: 8981243 - 9457941 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Repeatfinder output

Repeat found in LOC103320144
Repeat occurs 3 times in a sequence of 217 amino acids
Location between 9192610 and 9193264
Coverage of 15.21 %
Instances:
FFGYNQDAATA | FFGHNQNVVTA | FFGYNHEAAVG |
pattern: FFG[YH]N[HQ][NED][AV][AV][VT][AG]
MLLNNLQTLSDQPITVSYKKDDVAATDNLFFGYNQDAATAAADKLFFGHNQNVVTAADNVFFG
YNHEAAVGNQLLKDPTQVVFFLEKDVQPGTTMKYSLARNSTRATFLHRKTAESIPFSSTKLPDI
LNQLSVKPGSVEANIMTETIQACERPILGGEERYCTTSLESMVDFTTSKLGRNIQAISAEVKRK
GATMLQKYTIKPGVKKLAGKRMCVIS

### Similar gene clusters

### NC_024127 - Cluster 12 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024127 - Gene Cluster 12. Type = saccharide. Location: 11043922 - 11095196 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024127 - Cluster 13 - Cyclopeptide

### Gene cluster description

Download cluster GenBank file
NC_024127 - Gene Cluster 13. Type = cyclopeptide. Location: 18231734 - 18469923 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Repeatfinder output

No repeats detected in this cluster.

### Similar gene clusters

### NC_024127 - Cluster 14 - Transporter_associated

### Gene cluster description

Download cluster GenBank file
NC_024127 - Gene Cluster 14. Type = transporter_associated. Location: 19508144 - 19724381 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/transporter_associated: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[MatE/LTP_2/ABC2_membrane/ABC_tran]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024127 - Cluster 15 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024127 - Gene Cluster 15. Type = saccharide. Location: 26930863 - 27103992 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024127 - Cluster 16 - Polyketide-saccharide

### Gene cluster description

Download cluster GenBank file
NC_024127 - Gene Cluster 16. Type = polyketide-saccharide. Location: 41789694 - 41917199 nt. Click on genes for more information.
Show pHMM detection rules used
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024128 - Cluster 17 - Terpene

### Gene cluster description

Download cluster GenBank file
NC_024128 - Gene Cluster 17. Type = terpene. Location: 1253531 - 1301224 nt. Click on genes for more information.
Show pHMM detection rules used
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024128 - Cluster 18 - Fatty_acid-alkaloid

### Gene cluster description

Download cluster GenBank file
NC_024128 - Gene Cluster 18. Type = fatty_acid-alkaloid. Location: 5301490 - 5546987 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024128 - Cluster 19 - Putative

### Gene cluster description

Download cluster GenBank file
NC_024128 - Gene Cluster 19. Type = putative. Location: 8028424 - 8392255 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024128 - Cluster 20 - Cyclopeptide

### Gene cluster description

Download cluster GenBank file
NC_024128 - Gene Cluster 20. Type = cyclopeptide. Location: 10690246 - 11703287 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Repeatfinder output

Repeat found in LOC107880679
Repeat occurs 4 times in a sequence of 311 amino acids
Location between 10884102 and 10885142
Coverage of 11.58 %
Instances:
SSSSSASGG | SSSSASGGW | SSSASGGWS | SSSGSGRSG |
pattern: SSS[ASG][AS][ASG][RSG][WSG][WSG]
MTTALRGRRSAESSEIKRVKELGAKECMGGPDPAEAECWITDVERIFEVLECPDEDRVRLATF
LLKGNAYHWWKAAKRGYENPAAITWEEFQRIFSDQFYPHSYRYAKKTEFLYLKQGSMSVAEYEH
KFNELSRFAPELVATEEDRCRRFEGCLWWEIQTVVTASTYPNMRALAQAADRVSRTCAIGTGRR
RRDVQGLGGPSQGPSKRGGSSSSSASGGWSGGRGSSSGSGRSGSRPAWTQFSEQQPASSTARTP
SRQTGLTCYSCGQVGHFAKDCLNSIQGGDRSPTGARYYGSASESGWCYFLCSGIFQ

Repeat found in LOC103326133
Repeat occurs 3 times in a sequence of 681 amino acids
Location between 10897444 and 10899490
Coverage of 2.64 %
Instances:
KLGKGS | KLGEGG | KLGDFG |
pattern: KLG[DKE][FG][SG]
MLVNYAGYWIITHHSQNLDQILFLLFCLITPSVTPLTFDFPIFSPTDINTISLEGDTNLDRQF
LRLTKSCSLDQQEQSVGRATYHKPFLLRETTTGKLADFSTHFTFIIHSQNSSEYGNGLTFFLAP
DGSLLNRKLGKGSNLGLPVEHLPGHMSTNQYPFVAVEFDISQSGIPTIQDPIYDHVGVDVNSLK
SSKTGPWNGRVSDGQKNEAWINYNSSSKILTVAFTSFVNGTNGTQLQRTINYLDHIIDLNQYLP
DRVIVGFSASTGTPVALHGINSWSFNSTSLLDESANDNINIGLAVGLGVGGCLILFAGLVLFWK
KGRLRKSEEEPIVVDDEFDKGTGPRKFPYNELALATSDFKEEEKLGEGGFGGVYKGFIKDLNSY
VAVKRISKGSKQGQKEYTSEVRIISRLRHRNLVQLIGWCHEKGELLLVYEFMPNGSLDSHLFKA
KNMLVWEARYRIAQGLASGLLYLHEEWEQCVVHRDIKSSNILLDSNFNAKLGDFGLARLVDHGE
QSQTTVLAGTMGYMAPECLTNGKASKESDVYSFGVVALEIACGRKPINPQLERNQINMVEWVWE
LYGKGKLLEATDQKLCEDFDEKQMECLMIVGLWCAHPDYNMRPSIQQAIQVLNFEAALPVLPPK
KPVATYSTPPPSLPLLMSSCSTIGFEICEIESSGYAYSTNSS

Repeat found in LOC103326075
Repeat occurs 6 times in a sequence of 715 amino acids
Location between 10957398 and 10961324
Coverage of 6.71 %
Instances:
SPTSMDSS | SPTSMDTL | SPTECYVM | SPTSMDTL | SPTEPSIM
SPTSINTL |
pattern: SPT[SE][PCMI][YSND][SVIT][SML]
MDLKKLKGMNWVGNIYQKFEAICQEVDDIVNQDTIKYVENQVQTVGKSVKKLCSDVVQDLIPP
LGNPVNHDAQEVAITYNSAISTKSREDLEENSSDEIEKQSPAEPNVMDPVINQPSLVSSKYFLA
DQPSSPTSMDSSEVSESDVTVGKIHEVFSNENSLGATEMKSPSEPHVMDPVTNQLSTVSCKYQL
ADQPSSPTSMDTLELSEYDLSVEKIDEVLTNEKSLDATEESPTECYVMDPVTNQLSLGSSKFYL
ADQPYSPTSMDTLVLSEAYFSVENQESLDATENQSPPEPNVMDPVTNQPSLISCECHIADQQSA
PISMDTLEVSESDFSARKIDEVLTNGISLDATKNQSPTEPSIMDHVANQLSLVSSKYHLADQLS
SPTSINTLGVSESDLSVGKIDDNLTNENSDANNEEISIKMLDLTSPVVSEHFTESPFQVFAHSN
YENRHTFLPEVAPISPAHGLEFESQQKYTVCSDEILNVSGASNTTTKMVFSDVSGEDTIAEMGI
APFSSCNAKESLRLFEVTGCVSDVSNEIPTSASPLTVSGKIKDVDMGLSSFRGVLSQEPVEEGT
SRITLTLPLTVPSGKQQVQICESVDALNSFSDIGLSDESSCDFSHSSMETIDLHDKVMLEESCV
IVDDSVLHAISCRTRKLRSYKKRIQDAFTSKKRLTKEYEQLAIWFGDTDINSSQETLSNMKNLQ
THDACDSEWELL

Repeat found in LOC103326075
Repeat occurs 6 times in a sequence of 733 amino acids
Location between 10957398 and 10961324
Coverage of 6.55 %
Instances:
SPTSMDSS | SPTSMDTL | SPTECYVM | SPTSMDTL | SPTEPSIM
SPTSINTL |
pattern: SPT[SE][PCMI][YSND][SVIT][SML]
MDLKKLKGMNWVGNIYQKFEAICQEVDDIVNQDTIKYVENQVQTVGKSVKKLCSDVVQDLIPP
LGNPVNHDAQEVAITYNSAISTKSREDLEENSSDEIEKQSPAEPNVMDPVINQPSLVSSKYFLA
DQPSSPTSMDSSEVSESDVTVGKIHEVFSNENSLGATEMKSPSEPHVMDPVTNQLSTVSCKYQL
ADQPSSPTSMDTLELSEYDLSVEKIDEVLTNEKSLDATEESPTECYVMDPVTNQLSLGSSKFYL
ADQPYSPTSMDTLVLSEAYFSVENQESLDATENQSPPEPNVMDPVTNQPSLISCECHIADQQSA
PISMDTLEVSESDFSARKIDEVLTNGISLDATKNQSPTEPSIMDHVANQLSLVSSKYHLADQLS
SPTSINTLGVSESDLSVGKIDDNLTNENSDANNEEISIKMLDLTSPVVSEHFTESPFQVFAHSN
YENRHTFLPEVAPISPAHGLEFESQQKYTVCSDEILNVSGASNTTTKMVFSDVSGEDTIAEMGI
APFSSCNAKESLRLFECSPENLSLEAMFSHNYVEVTGCVSDVSNEIPTSASPLTVSGKIKDVDM
GLSSFRGVLSQEPVEEGTSRITLTLPLTVPSGKQQVQICESVDALNSFSDIGLSDESSCDFSHS
SMETIDLHDKVMLEESCVIVDDSVLHAISCRTRKLRSYKKRIQDAFTSKKRLTKEYEQLAIWFG
DTDINSSQETLSNMKNLQTHDACDSEWELL

### Similar gene clusters

### NC_024128 - Cluster 21 - Alkaloid

### Gene cluster description

Download cluster GenBank file
NC_024128 - Gene Cluster 21. Type = alkaloid. Location: 12285551 - 12344424 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024128 - Cluster 22 - Saccharide-terpene

### Gene cluster description

Download cluster GenBank file
NC_024128 - Gene Cluster 22. Type = saccharide-terpene. Location: 13001627 - 13282858 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024128 - Cluster 23 - Polyketide

### Gene cluster description

Download cluster GenBank file
NC_024128 - Gene Cluster 23. Type = polyketide. Location: 18954368 - 19067118 nt. Click on genes for more information.
Show pHMM detection rules used
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024129 - Cluster 24 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024129 - Gene Cluster 24. Type = saccharide. Location: 881318 - 977969 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024129 - Cluster 25 - Transporter_associated

### Gene cluster description

Download cluster GenBank file
NC_024129 - Gene Cluster 25. Type = transporter_associated. Location: 5282885 - 5398100 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/transporter_associated: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[MatE/LTP_2/ABC2_membrane/ABC_tran]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024129 - Cluster 26 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024129 - Gene Cluster 26. Type = saccharide. Location: 14269364 - 14586332 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024129 - Cluster 27 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024129 - Gene Cluster 27. Type = saccharide. Location: 15671016 - 15807133 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024130 - Cluster 28 - Putative

### Gene cluster description

Download cluster GenBank file
NC_024130 - Gene Cluster 28. Type = putative. Location: 1877305 - 2148130 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024130 - Cluster 29 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024130 - Gene Cluster 29. Type = saccharide. Location: 15640102 - 15784889 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### Similar known gene clusters

### NC_024130 - Cluster 30 - Polyketide-lignan

### Gene cluster description

Download cluster GenBank file
NC_024130 - Gene Cluster 30. Type = polyketide-lignan. Location: 20191791 - 20250784 nt. Click on genes for more information.
Show pHMM detection rules used
plants/lignan: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Dirigent]))
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024131 - Cluster 31 - Terpene

### Gene cluster description

Download cluster GenBank file
NC_024131 - Gene Cluster 31. Type = terpene. Location: 1629628 - 1655972 nt. Click on genes for more information.
Show pHMM detection rules used
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024131 - Cluster 32 - Alkaloid

### Gene cluster description

Download cluster GenBank file
NC_024131 - Gene Cluster 32. Type = alkaloid. Location: 3223075 - 3338265 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024131 - Cluster 33 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024131 - Gene Cluster 33. Type = saccharide. Location: 7971352 - 8047120 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024131 - Cluster 34 - Cyclopeptide

### Gene cluster description

Download cluster GenBank file
NC_024131 - Gene Cluster 34. Type = cyclopeptide. Location: 10698894 - 11105891 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Repeatfinder output

The following known motifs were found in CDS LOC103335633
Location between 10906789 and 10907626
FEPR was found 2 times in this sequence
Sequence:
MKSPCAILALFSLILFAKTIESRRDVGKDWKNVVKEQPMPQAIEGLLVDISDSTPKVKADCHE
KVKKPFVEVEVEVEEFEPRPNVSSYNDDETKAELSSKDNAGPKAKQSFAAKEDKQPFEEDFEPR
PNVSVYND

The following known motifs were found in CDS LOC103335634
Location between 10909958 and 10910815
FEPR was found 2 times in this sequence
Sequence:
MKSLCAILALFSLLLFAKTIDSRRDVGKYWKNVMKEQPMPQAIEGLLVDISDSTAKEKANCHE
KVKKPFVEVEVEVEEFEPRPSTTSYNDHETKAKLSSKDNAGPKAKQSFAAKEDKQPFEEDFEPR
PNLSVYND

Repeat found in LOC103335642
Repeat occurs 4 times in a sequence of 463 amino acids
Location between 10983152 and 10986741
Coverage of 5.18 %
Instances:
TPSTTP | TPSTPS | TPSTPR | TPSPKP |
pattern: TPS[PT][PKT][RPS]
MASLSHLPIFLSLLFTAFYSAASQSFIGVNYGQVADNLPPPAATAKLLQSTAIKRVRLYGADP
AIIKALAGTGIAIAIGASNGDIPALASDPNAAAQWVNSNVLAFYPTSNIDLINVGNEVLFSNDQ
GLISQLLPAMRNVQSALSAASLGGKVRVSTVHAMTLLAQSDPPSSGRFNPGLQDVLKGLLAFQR
DNGSPFAVNPYPFFAYQSDPRPETLAFCLFQPNAGRVDAGTGIKYMNMFDAQVDGVRSALNAIG
FKDIEILIAETGWPYRGDSNEVGPSVENARAYNGNLIAHLRSRVGTPLMPGKSVETYIFALYDE
DLKPGGTSERSFGLYKPDLTVTYDVGLSKSSQTPSTTPSTPSTPRVTPSPKPSSAWCVPKAGVS
DAQLQANLDYACGHGIDCSAIQPGGACFDPNTVASHAAYAMNLYYHTVGTIPLNCDFSQTATLI
SSNPSYNACTYPGGNT

Repeat found in LOC103335648
Repeat occurs 3 times in a sequence of 310 amino acids
Location between 11032493 and 11034076
Coverage of 5.81 %
Instances:
GVGIGL | GVGIGV | GVGLLI |
pattern: GVG[LI][LG][LVI]
MGNFYEASNGHGPTDNGQMVVRQSNYQTCIKVSLPWLDVRVFYVRISKYEIDDSAPEFLTVNH
IPLDPDTLLEVNGVRTSINSDGATTLLRRDRLDKKSEEATFVSTDSIRMTGSVKFEVFDKDVVV
LSGVLELCNSNGFNAETDHHGQRWSMNCESDISASSGFFKGKQFTGAESASPSIEVYIAGSFSG
TPIILTKTLQLGLWKKHVRKRLLDSIPEYEATENQRNNPSRFDFQESEYSYYKPENGENNMYWG
TAYVEGEDGELSWFNAGVRVGVGIGLSMCVGVGIGVGLLIRTYQGTTRNFRRQLL

Repeat found in LOC103335648
Repeat occurs 3 times in a sequence of 310 amino acids
Location between 11032493 and 11034076
Coverage of 5.81 %
Instances:
GVGIGL | GVGIGV | GVGLLI |
pattern: GVG[LI][LG][LVI]
MGNFYEASNGHGPTDNGQMVVRQSNYQTCIKVSLPWLDVRVFYVRISKYEIDDSAPEFLTVNH
IPLDPDTLLEVNGVRTSINSDGATTLLRRDRLDKKSEEATFVSTDSIRMTGSVKFEVFDKDVVV
LSGVLELCNSNGFNAETDHHGQRWSMNCESDISASSGFFKGKQFTGAESASPSIEVYIAGSFSG
TPIILTKTLQLGLWKKHVRKRLLDSIPEYEATENQRNNPSRFDFQESEYSYYKPENGENNMYWG
TAYVEGEDGELSWFNAGVRVGVGIGLSMCVGVGIGVGLLIRTYQGTTRNFRRQLL

Repeat found in LOC103335648
Repeat occurs 3 times in a sequence of 310 amino acids
Location between 11032493 and 11034076
Coverage of 5.81 %
Instances:
GVGIGL | GVGIGV | GVGLLI |
pattern: GVG[LI][LG][LVI]
MGNFYEASNGHGPTDNGQMVVRQSNYQTCIKVSLPWLDVRVFYVRISKYEIDDSAPEFLTVNH
IPLDPDTLLEVNGVRTSINSDGATTLLRRDRLDKKSEEATFVSTDSIRMTGSVKFEVFDKDVVV
LSGVLELCNSNGFNAETDHHGQRWSMNCESDISASSGFFKGKQFTGAESASPSIEVYIAGSFSG
TPIILTKTLQLGLWKKHVRKRLLDSIPEYEATENQRNNPSRFDFQESEYSYYKPENGENNMYWG
TAYVEGEDGELSWFNAGVRVGVGIGLSMCVGVGIGVGLLIRTYQGTTRNFRRQLL

### Similar gene clusters

### NC_024131 - Cluster 35 - Transporter_associated-saccharide

### Gene cluster description

Download cluster GenBank file
NC_024131 - Gene Cluster 35. Type = transporter_associated-saccharide. Location: 13414243 - 13674843 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))
plants/transporter_associated: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[MatE/LTP_2/ABC2_membrane/ABC_tran]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024131 - Cluster 36 - Polyketide

### Gene cluster description

Download cluster GenBank file
NC_024131 - Gene Cluster 36. Type = polyketide. Location: 17706963 - 17904400 nt. Click on genes for more information.
Show pHMM detection rules used
plants/polyketide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Chal_sti_synt_C/Chal_sti_synt_N]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Thr_dehydrat_C]) or minimum(3,[E1_dh,PALP,Thr_dehydrat_C,Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[AMP-binding,Chal_sti_synt_C,Chal_sti_synt_N]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024131 - Cluster 37 - Fatty_acid

### Gene cluster description

Download cluster GenBank file
NC_024131 - Gene Cluster 37. Type = fatty_acid. Location: 19762454 - 19910096 nt. Click on genes for more information.
Show pHMM detection rules used
plants/fatty_acid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[FA_desaturase/FA_desaturase_2/FA_hydroxylase/CER1-like_C]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,ECH_2]) or minimum(3,[Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Transferase,AMP-binding]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024131 - Cluster 38 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024131 - Gene Cluster 38. Type = saccharide. Location: 20918557 - 21049991 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024132 - Cluster 39 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024132 - Gene Cluster 39. Type = saccharide. Location: 1982419 - 2142662 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024132 - Cluster 40 - Alkaloid

### Gene cluster description

Download cluster GenBank file
NC_024132 - Gene Cluster 40. Type = alkaloid. Location: 6491801 - 6521752 nt. Click on genes for more information.
Show pHMM detection rules used
plants/alkaloid: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Bet_v_1/Cu_amine_oxid/Str_synth/BBE/Orn_DAP_Arg_deC/Pyridoxal_deC]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024132 - Cluster 41 - Lignan

### Gene cluster description

Download cluster GenBank file
NC_024132 - Gene Cluster 41. Type = lignan. Location: 9656903 - 9709216 nt. Click on genes for more information.
Show pHMM detection rules used
plants/lignan: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Dirigent]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024132 - Cluster 42 - Cyclopeptide

### Gene cluster description

Download cluster GenBank file
NC_024132 - Gene Cluster 42. Type = cyclopeptide. Location: 13751415 - 14008936 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Repeatfinder output

No repeats detected in this cluster.

### Similar gene clusters

### NC_024133 - Cluster 43 - Putative

### Gene cluster description

Download cluster GenBank file
NC_024133 - Gene Cluster 43. Type = putative. Location: 3145406 - 3623324 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024133 - Cluster 44 - Terpene

### Gene cluster description

Download cluster GenBank file
NC_024133 - Gene Cluster 44. Type = terpene. Location: 5399367 - 5535381 nt. Click on genes for more information.
Show pHMM detection rules used
plants/plant: (minimum(4,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[]))
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024133 - Cluster 45 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024133 - Gene Cluster 45. Type = saccharide. Location: 8741123 - 8823595 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024133 - Cluster 46 - Saccharide

### Gene cluster description

Download cluster GenBank file
NC_024133 - Gene Cluster 46. Type = saccharide. Location: 10562576 - 10620989 nt. Click on genes for more information.
Show pHMM detection rules used
plants/saccharide: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Glycos_transf_1/Glycos_transf_2/Glycos_transf_28/UDPGT/UDPGT_2/Glyco_hydro_1/Cellulose_synt]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NC_024133 - Cluster 47 - Terpene

### Gene cluster description

Download cluster GenBank file
NC_024133 - Gene Cluster 47. Type = terpene. Location: 14930965 - 14966635 nt. Click on genes for more information.
Show pHMM detection rules used
plants/terpene: (minimum(3,[NAD_binding_4, FAE1_CUT1_RppA, HAD_RAM2_N, Orn_DAP_Arg_deC,Pyridoxal_deC,BBE,FA_hydroxylase,CER1-like_C,ECH_2,Oxidored_FMN,3Beta_HSD,Glyco_hydro_1,ADH_N,ADH_N_2,Abhydrolase_3,Aldo_ket_red,cMT,nMT,oMT,adh_short,Chal_sti_synt_C,Chal_sti_synt_N,COesterase,UDPGT,Glyco_transf_28,Glycos_transf_1,Glycos_transf_2,Lycopene_cycl,NAD_binding_1,p450,SQHop_cyclase_C,SQHop_cyclase_N,Prenyltrans,Terpene_synth_C,Terpene_synth,Transferase,Aminotran_1_2,AMP-binding,DIOX_N,Dirigent,Bet_v_1,Cu_amine_oxid,Str_synth,Trp_syntA,His_biosynth,adh_short_C2,Peptidase_S10,Prenyltransf,Epimerase,2OG-FeII_Oxy,Aminotran_3,Methyltransf_2,Methyltransf_3,Methyltransf_7,PRISE,Cellulose_synt,Chalcone,ERG4_ERG24,FA_desaturase,FA_desaturase_2,Methyltransf_11,polyprenyl_synt,SE,SQS_PSY,TPMT,UbiA,Lipoxygenase,Lyase_aromatic,HMGL-like,Chalcone_3,Chalcone_2,Acetyltransf_1,UDPGT_2,GMC_oxred_N,GMC_oxred_C,Amino_oxidase,DAHP_synth_1,DAHP_synth_2],[Terpene_synth/Terpene_synth_C/Prenyltrans/SQHop_cyclase_C/SQHop_cyclase_N/PRISE]))

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Similar gene clusters

### NW_007362524 - Cluster 48 - Cyclopeptide

### Gene cluster description

Download cluster GenBank file
NW_007362524 - Gene Cluster 48. Type = cyclopeptide. Location: 1 - 152473 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Repeatfinder output

### Similar gene clusters

### NW_007362547 - Cluster 49 - Cyclopeptide

### Gene cluster description

Download cluster GenBank file
NW_007362547 - Gene Cluster 49. Type = cyclopeptide. Location: 1 - 93044 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Repeatfinder output

No repeats detected in this cluster.

### Similar gene clusters

### NW_007362718 - Cluster 50 - Cyclopeptide

### Gene cluster description

Download cluster GenBank file
NW_007362718 - Gene Cluster 50. Type = cyclopeptide. Location: 1 - 26122 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Repeatfinder output

Repeat found in LOC103343767
Repeat occurs 3 times in a sequence of 337 amino acids
Location between 5206 and 6519
Coverage of 7.12 %
Instances:
GIKGYNQK | GIKGYNQK | GIKAEEKY |
pattern: GIK[AG][YE][NE][KQ][YK]
MGFHLPLIFAILSLAAVALANHAAQPAPQLYWKSVLPNTQMPRAISELLHTDSTNEEKSTYMN
AVGNGKGKPEIFPLGIKGYNQKQYGGGIKGYNQKRYGKGSPSSDNQLLHYKDFALFFFEKDMRP
GATMKFQFPRNSNTATFLPRESAQSIPFTSNKLPEIFNHFSVKPTSVEAKTIKQTIEECKAPGI
KAEEKYCATSLESMVDFSTSKLGTRNVEAISTEVLERGATMSMHNYTTMPGLKKLAGDKVVVCH
KENYPYAVFFCHAIKQTAAYVLSLKGDDGEKVKAVTICHLDTSEWNPEHLSFKILNVKPGTVAI
CHFISTDGIVWVPKHKSA

### Similar gene clusters

No significant ClusterBlast hits found.

### NW_007363025 - Cluster 51 - Cyclopeptide

### Gene cluster description

Download cluster GenBank file
NW_007363025 - Gene Cluster 51. Type = cyclopeptide. Location: 1 - 8387 nt. Click on genes for more information.
Show pHMM detection rules used
plants/cyclopeptide: (BURP)

#### Legend:

Only available when smCOG analysis was run
biosynthetic genes
transport-related genes
regulatory genes
other genes

### Repeatfinder output

No repeats detected in this cluster.

### Similar gene clusters